Daucus carota subspecies sativus
Superclass
Apiaceae
Genus
Daucus
Species
carota
Infraspecific Type
subspecies
Infraspecies
sativus
Abbreviation
Daucus carota subsp. sativus
Common Name
Carrot
Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus; Daucus carota
Description
For a general overview of carrot, see the Carrot Facts Page
Publication
- Ya-Hui Wang, Pei-Zhuo Liu, Hui Liu, Rong-Rong Zhang, Yi Liang, Zhi-Sheng Xu, Xiao-Jie Li, Qing Luo, Guo-Fei Tan, Guang-Long Wang, Ai-Sheng Xiong. Telomere-to-telomere carrot (Daucus carota) genome assembly reveals carotenoid characteristics. Horticulture Research. 2023 May 10; (uhad103).
- United States Department of Agriculture and Organic Seed Alliance. Notice of release of carrot inbred L1408, L2575, L7553, and L9793 germplasm. USDA Germplasm Release. 2024 Jan 03; 2024(1):1-3.
- United States Department of Agriculture and Organic Seed Alliance. Notice of release of carrot cultivars R6220 and R6636. USDA Germplasm Release. 2021; 2021(2):1-3.
- United States Department of Agriculture and Organic Seed Alliance. Notice of release of yellow carrot cultivar Y1246. USDA Germplasm Release. 2021 Mar 24; 2021(1):1-2.
Database Reference Annotations
Analysis
- Carrot Genome Assembly DH1 v3.0 Regulatory Gene Annotation
- Carrot Genome Assembly V.2 RNAseq population 70796 dOr vs. pOr
- Carrot Genome Assembly V.2 RNAseq population 97837 Y vs. W
- NCBI accession CM004358; Daucus carota subsp. sativus cultivar DH1 plastid, complete sequence, whole genome shotgun sequence.
- Nantaise transcriptome assembly Arias et al. 2020
- DCAR V3.0 Gene Prediction
- Pathogen Receptor Genes in carrot genome assembly V2
- Repeat Explorer 2013 Analysis
- BGI Tandem Repeats Annotation
- 2017 Miniature Inverted Repeat Transposable Element Insertions
- 10.1080/13102818.2019.1701551 2019 SSR
- Carrot Genome Assembly DH1 v3.0 Repetitive DNA Annotation
- Daucus carota genome V.3 SSR Detection with MISA
- Carrot Genome Assembly DCARv1 Gap Fill
- DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0
- NCBI Daucus carota subsp. sativus Annotation Release 100
- BGI Mobile Element Annotation
- Nantaise transcriptome assembly Arias et al. 2020 blast to DCARv2
- Carrot Genome Assembly DCARv2 Gaps
- DCAR V1.0 Gene Prediction
- DCAR peptide blastp to SwissProt and TrEMBL without DCAR
- Carrot Genome Assembly DCARv2
- Carrot Genome Assembly DCARv3 Gaps
- Carrot Genome Assembly DH1 v3.0 Tandem Repeats annotation by trf
- NCBI accession OP801828; Daucus carota subsp. sativus cultivar B493A mitochondrion, complete genome.
- NCBI accession OP801825; Daucus carota subsp. sativus cultivar B2163B mitochondrion, complete genome.
- NCBI accession OP801826; Daucus carota subsp. sativus cultivar B2163A mitochondrion, complete genome.
- NCBI accession OP801827; Daucus carota subsp. sativus cultivar B10138A mitochondrion, complete genome.
- NCBI accession JQ248574; Daucus carota subsp. sativus mitochondrion, complete genome.
- NCBI accession LNRQ01000010; Daucus carota subsp. sativus cultivar DH1 DCARv2_MT mitochondrial, whole genome shotgun sequence.
- NCBI accession LNRQ01000011; Daucus carota subsp. sativus cultivar DH1 DCARv2_PT plastid, whole genome shotgun sequence.
- 2011 Carrot EST Assembly
- Daucus carota vT2T Genome; Chromosome level assembly
- Carrot Genome Assembly DH1 v3.0
- 10.1534/g3.117.043067 Transcriptome Analysis for Yâ‚‚
- An Automated Image Analysis Pipeline Enables Genetic Studies of Shoot and Root Morphology in Carrot (Daucus carota L.)
- Stowaway miniature inverted repeat transposable elements 2019
- DCARv2 Mapped Markers
Map
- 2011 SS1061
- 2013 10117 A
- 2013 10117 B
- 2019 3242
- 2019 5171
- 2019 3242r
- 2019 5171r
- 2014 70349
- 2016 85036 NG
- 1997 9304×7262
- 2000 BrasÃlia×6274 AFLP
- 2000 BrasÃlia×6274 RAPD
- 2014 J.Parsons Th. Br1091×HM1
- 2014 J.Parsons Th. Br1091×HM1F3
- 2014 J.Parsons Th. Fig_2.4
- 2014 J.Parsons Th. Fig_3.5
- 2014 J.Parsons Th. Fig_4.4
- 2014 J.Parsons Th. HM3
- 2014 J.Parsons Th. SFF×HM2
- 1993 189 Euphytica
- 1993 157 Euphytica
- 1993 179 Euphytica
- 1993 197 Euphytica
- 2001 BrasÃlia×HCM Bsb
- 2001 BrasÃlia×HCM HCM
- 2017 74,146
- 2016 70349 NG bin map
- 2016 70796 NG full map
- 2017 2569
- 2011 SS1061QTL
- 2016 70349 NG full map
- 2016 80592 NG bin map
- 2016 70796 NG bin map
- 2016 80592 NG full map
- 1997 9304×7262JB
- 2014 yel×cola
- 2017 TPS QTL
- 2014 70349 DArT
- 2013 Criolla×Bienal
- 2016 Integ NG full map
- 2001 BrasÃlia×HCM C+R
- 2011 FISH
- 2015 HM3
- 2018 L8708×Z020
- 2014 Mj-2
- 2015 PC2+PC3 Consensus
- 2015 MB Merged
- 2010 P50006×HCM
- 2015 SFF×HM2
- 2021 B493 × Z007 F₃
- 2015 Br1091×HM1
- 2000 BrasÃlia×6274 RAPD STS
- 2000 BrasÃlia×6274 RAPD(T) 6274
- 2000 BrasÃlia×6274 RAPD(T) Bsb
- 2017 L8708×Z020Th
- 2016 Integ NG bin map