Carrot Genome Assembly DCARv2 Gaps

Name

Type

Analysis

Description

This analysis represents the JBrowse annotation of gaps in the assembled carrot genome sequence.

This JBrowse track shows all gaps in the genome assembly consisting of runs of 1 or more 'N's. Gaps of exactly 1000nt are a special case, and represent gaps of undetermined size.

Data from this analysis can be viewed in JBrowse here.

Software Name

detection using regular expression

Software Version

not specified

Data Source Name

CarrotOmics 177698

Relationship

The Analysis Carrot Genome Assembly DCARv2 Gaps is a part of Genome Assembly Carrot Genome Assembly DCARv2

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

File

File	Type
DCARv2 Gaps JBrowse GFF3	GFF3

Organism

Daucus carota subsp. sativus