DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0

Name

Type

Analysis

Description

Gene predictions from the Carrot Genome Assembly DCARv2 were transferred to the Carrot Genome Assembly DCARv3 using GMAP. Organellar annotations were transferred separately using CrossMap with manual corrections for trans-spliced genes.

Software Name

GMAP and CrossMap

Software Version

2020-04-05-v2-cds_vs_DCARv3.4.HMD

Data Source Name

Carrot Genome Assembly DH1 v3.0

Relationship

The Analysis DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0 derives from Genome Annotation DCAR V1.0 Gene Prediction
The Analysis DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0 is a part of Genome Assembly Carrot Genome Assembly DH1 v3.0

Publication

Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.

Project

Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot

Biological Sample

SAMN03216637

File

File	Type
DCARv2 Gene annotation V1.0 locations on DCARv3 assembly	GFF3

Organism

Daucus carota subsp. sativus