Nantaise transcriptome assembly Arias et al. 2020
Data_source_file
438_2020_1707_MOESM1_ESM.xlsx
Name
Nantaise transcriptome assembly Arias et al. 2020
Type
Analysis
Description
Plants of commercially acquired carrot (Daucus carota L.) cultivar Nantaise were harvested 8 weeks after sowing.
RNA was sequenced by OMIC Solution (Santiago, Chile) using the Ion Torrent PGM technology (chip P1.1.17) with IonXpress RNA kit (Thermo Fisher Scientific) after library profile analysis using an Agilent 2100 Bioanalyzer (Agilent Technologies, USA). Adapter sequences were removed, and a de novo transcriptome assembly was carried out following CLC Genomics Workbench default parameters including a quimera analysis.
The assembly contains 63,164 contigs, from which 18,488 genes are differentially expressed (DEG) between the two experimental conditions light and dark.
Software Name
CLC Genomics Workbench + quimera
Software Version
not specified
Data Source Name
Publication supplemental table S9
Data Source URI
Relationship
The Analysis Nantaise transcriptome assembly Arias et al. 2020 blast to DCARv2 is a part of Analysis Nantaise transcriptome assembly Arias et al. 2020
Biological Sample
- SAMN14648297
- SAMN14648296
- SAMN14648295
File
| File | Type |
|---|---|
| Nantaise transcriptome assembly Arias et al. 2020 FASTA file | FASTA format |
Organism