Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot
Name
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot
Type
Project
Description
The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.
Analysis
- Carrot Genome Assembly DH1 v3.0
- NCBI Daucus carota subsp. sativus Annotation Release GCF_001625215.2-RS_2024_03
- Carrot Genome Assembly DH1 v3.0 Regulatory Gene Annotation
- Carrot Genome Assembly DH1 v3.0 Resistance Gene Annotation
- DCAR V3.0 Gene Prediction
- Carrot Genome Assembly DH1 v3.0 Repetitive DNA Annotation
- DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0
- Carrot Genome Assembly DCARv3 Gaps
- Daucus carota genome V.3 SSR Detection with MISA
- Carrot Genome Assembly DH1 v3.0 Tandem Repeats annotation by trf
Publication
- Iorizzo M et al. Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot (Daucus carota). Jan. 11, 2020. XXVII Plant and Animal Genome Abstract W046.
- Liu, Su. Improved Hybrid De Novo Genome Assembly, Resistance Gene Prediction and Annotation of Carrot (Daucus carota). M.Sc. Thesis. 2020. North Carolina State University.
- Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.
Relationship
The Project Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot is a subproject of Project Carrot Genome Sequencing Project
Database Reference Annotations
Biological Sample