XM_017392872.1 | CarrotOmics Tripal4

Gbkey

mRNA

Gene

LOC108219423

Model_evidence

Supporting evidence includes similarity to: 2 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns

Name

XM_017392872.1

Organism

Daucus carota subsp. sativus

Product

violaxanthin de-epoxidase, chloroplastic, transcript variant X1

Transcript_id

XM_017392872.1

Type

mRNA

Unique Name

XM_017392872.1

Sequence Residues

TCATTACATATGTGGCGGGGTTTGACACCTAACAGTATCTTGTAATCACA
CAATGTCTTATCTCATTTCTCTCCCTTTCCCCATCACACCCTCCATATTT
TGATGACATGCTTCTCTCCCTCCTCATCCTCAAGAATTCACACTGAAGTA
TGGCCTTTTGTCTACACTCAACTTTTATATCCAGTGAATGCAACAGCTTG
TATTCCACAACCCAATTCACCACCAATGGAAGGTTTGCAGGTCGAAGGAC
GGATTTTAATAATGGTGGTTTAGTTATGGTGAAATTGTGGTCGAATTGCA
AAAGATCCACACCTACGCAGGTTATAAGGAATCTTAGGGTATATTGCGGG
TTGGACTCTAGGTTCCCTGATATTTTGTCGAATGGAAGGGCAAAGATTTT
TTCCTTGTGTAATATCGAAGCAGTTATGAAGAGTAAGGACCCATTCAACC
TGGAAACAACGGTCAAATTGATTGCTCAGAAGCAGTGGAGCCAGTTTGCA
GCAGTAGCTCTTGTATTGGCTTGTACATTCGTGATAATACCAAATGCAGA
TGCTGTTGACGCTCTCAAAACTTGTACTTGCTTACTTAAGGAGTGCAGGG
TGGAGCTTGCCAAATGCATTGCAAACCCATCATGTGCAGCCAATGTTGCT
TGTCTCCAAACATGCAACAATAGACCTGATGAGACCGAATGCCAGATAAA
GTGTGGGGATCTGTTTGAAAACAGTGTCGTAGATCAGTTCAATGAGTGTG
CTGTATCGAGAAAGAAATGTGTGCCACGTAAATCTGACGTGGGTGAATTT
CCTGTCCCGGCAGCTGATGTGCTTGTAAAAAGCTTCAACATCAATGATTT
CACTGGGAAGTGGTTTATTACTAGTGGTCTAAATCCAACATTTGATGCTT
TTGATTGCCAATTGCACGAGTTCTACACAGAAGGCAACAAACTTGTAGGA
AATTTGTCATGGCGCATAGGAACTCCAGATGGTGGTTTTTTTAATCGATC
AGCTGTACAGAAATTTGTACAAGATCCATCCCAGCCGGGAATCCTCTACA
ATCATGACAATGAGTATCTCCATTACGAAGATGACTGGTATATTTTGTCT
TCAAAGCTAGAGGGTACACCAGAAGACTATCTATTTGTATATTACAGAGG
AAAGAATGATGCATGGGATGGATATGGTGGCGCATTTGTGTACACAAGAA
GTGCAGTTTTGCCCGAAAGTATTGTACCTGAACTAGAAAGGGCTGCTAAA
AGCGTGGGTAGGGACTTCAACACCTTTATCAGAACTGACAATACATGCGG
GCCTGAACCTCCCCTTATTGATAGACTGGAGAAGACAGCAGAAGCAGGGG
AAAGGACGATTATAAAAGAGGTTGAGGAGATAGAACAGGAGGTGGAGAAA
GTGAAGGACACAGAAGTGAGTCTGTTCCGTAGGTTGGCCGAAGGGTTCAA
AGTGTTCCTAGAAGATGAACAAAACGCACTCAATGGGCTGACTAAAGAAG
AGGAGGAGATTTTGAGTGGCCTACAAATGGAAGCAGCTGAGGTAGAAAAA
CTCTTCGAAAATGCACTACCTATCAGGAAGTTGAGATAAGTAATATTTAC
GCTATATGAGAGGCTCTCTCAACCGATCAAAGACAGATTTGTATTAGCTT
AAATGTATAGATTCGAAGTTATCATATAGTACACACAATATATTGAAAAT
CATTTTTGAATCAACTCCTATCGTTTTTTAAGGTCACACACAAAGGAAAG
AGGTCATTTGAACATATATTCCTATATTTTTCTCTCGATA

Sequence Length

1790

Sequence MD5 Checksum

29bf17d69ab54c2f92ba2abbb7effa8c

Relationship

The XM_017392872.1 derives from mRNA XM_017392872.1
The mRNA XM_017392872.1 is a part of Gene LOC108219423
The XM_017392872.1.exon1 is a part of mRNA XM_017392872.1
The XM_017392872.1.exon2 is a part of mRNA XM_017392872.1
The XM_017392872.1.exon3 is a part of mRNA XM_017392872.1
The XM_017392872.1.exon4 is a part of mRNA XM_017392872.1
The XM_017392872.1.exon5 is a part of mRNA XM_017392872.1
The XM_017392872.1.exon6 is a part of mRNA XM_017392872.1
The XP_017248361.1 is a part of mRNA XM_017392872.1

Database Reference Annotations

Analysis

Is Analysis

False

Is Obsolete

False