DCAR_020544 | CarrotOmics Tripal4

Cds

>DCAR_020544cds ATGAAAGTGATGGATACTCTACTAAAGACTCATAACAAGCTTGAGTTTTT CAATCCAATTCATGGGTTTCCTGATAAAGTTGGAACCCTGAGTTGTTTGA AGTTTCGAAACCAGGAGCTGAGGTTTGGCTCTAGAAGATCGAATGTAAAT TGGGGGAAGAACGGTTCTGTAAAGGCTAGTAGTAGTGCCCTTTTGGAGCT TGTTCAAGAAACCAAGAAAGAAAATCTTGAATTTGACCTTCCTTTGTATG ACCCGTCGAATGGCCTTGTAGTGGACTTGGCTGTAGTTGGTGGAGGTCCT GCAGGGTTAGCGGTAGCACAACAAGTTTCTGAGGCAGGACTTGCGGTTGT GTCTATAGACCCTTCTCCAAAATTGATATGGCCAAACAATTATGGTGTTT GGGTGGATGAGTTTGAGGCTATGGATTTGCTAGATTGCCTTGACACTACC TGGTCAAGTGCAATTGTTTACATTGATGACCAGACAACCAAAGAGCTCGG AAGACCGTATGGAAGGGTTAACAGGAAGCAGCTTAAATCTAAAATGATGC AGAAGTGCATATCAAATGGAGTTAAATTTCATCAGGCTAAGGTTGTAAAA GTTGTACACGAGGAAGCTAAATCCCTATTGATATGTAATGATGGTGTGAC CATTCAAGCTGCTGTAGTTCTTGATGCAACCGGTTTTTCAAGATGTCTTG TTCAATACGACAAGCCATATAATCCAGGATACCAAGTAGCTTATGGAATA GTGGCAGAAGTAGAAGAACATCCTTTTGATGTAAATAAGATGATTTTCAT GGACTGGAGAGATTCCCATCTTAATGGCAATACAGAATTAAAAGAAAGAA ACAGTAAAATCCCTACGTTTCTTTATGCTATGCCTTTTTCATCTGACAGA ATATTTCTTGAAGAAACATCCCTTGTAGCTCGTCCAGGTTTAGCCATGGG AGATATTCAGGAGAGAATGGTGGCTCGCCTAAGGCATTTGGGTATTAAAG TGAAGAGCATTGAAGAGGATGAGAGATGTGTGATCCCAATGGGAGGGCCT CTGCCTGTACTCCCTCAGAGAGTAGTGGGAATTGGCGGTACAGCTGGTAT GGTGCATCCTTCCACTGGATATATGGTAGCAAGAACTCTAGCTGCTGCAC CAGTTGTTGCCAATGCAATAGTTCAGTACCTTGGTGGTTCTAAGAAAGGC GCTTTGGGAAACGAATTGTCTGCAGAAGTCTGGAAAGATCTATGGCCAAT AGAGAGAAGACGCCAGCGAGAATTCTTTTGCTTTGGTATGGATATTTTGC TAAAACTCGATTTGCCTGGTACAAGAAGGTTTTTCAGTGCTTTTTTTGAC CTGGAACCTCGCTATTGGCATGGATTCTTGTCTTCTCGACTATTTCTTCC TGAACTATTCTTTTTCGGGCTTTCTCTTTTCTCAAATGCCTCCAACACTT CTAGAATAGAGATCATGGCAAAAGGCACGGTTCCTTTGGTAAACATGGTA AACAATCTGATCAAAGATAGAGAATAG

Gene

LCYB1

Locus_tag

DCAR_020544

Name

DCAR_020544

Organism

Daucus carota subsp. sativus

Pep

>DCAR_020544pep MKVMDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVN WGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGP AGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTT WSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVK VVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI VAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDR IFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGP LPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKG ALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFD LEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMV NNLIKDRE*

Sequence Coordinates

DCARv2_Chr6:30446170..30448442-

Type

gene

Unique Name

DCAR_020544.gene

Sequence Residues

ATTATTTTCTCGTGGCAACCTAGGCAAAGACATCCCTGCCGCACATGTTT
GGATGATTTGATTTTGGATATCTTCACCCACAAATTATTTTTTATTTTTA
GAAAGAAAATAAAAGAATTTGTTTCAAGTGAGTGCAGCTTACACCTACTT
GATTATATGAAAAATGAGATATGCTTGTATGTATCTCGTCTGTATCTACC
TCCAATCCCTCTTGCTGCTAGATGGGTAAGTCTTTAATTCTTTAACCGTA
GCTTTATTTACTTGTAATTCTCCAATATCTTCTGCAGTTATATGTTTAGT
ACATGTTTTTATTTTGAACAATTTTTTATTAAGTCACTCTGAAATTTCCA
TTAATTATTGGTGAAAGTTAGCATAAAGGTTGAGAATTTGGGATATCTTG
GAACCCAGATTTTGTTTTTGGAGATATATTTGGTAAATTAATAGAACCAT
ACATGAAAGTGATGGATACTCTACTAAAGACTCATAACAAGCTTGAGTTT
TTCAATCCAATTCATGGGTTTCCTGATAAAGTTGGAACCCTGAGTTGTTT
GAAGTTTCGAAACCAGGAGCTGAGGTTTGGCTCTAGAAGATCGAATGTAA
ATTGGGGGAAGAACGGTTCTGTAAAGGCTAGTAGTAGTGCCCTTTTGGAG
CTTGTTCAAGAAACCAAGAAAGAAAATCTTGAATTTGACCTTCCTTTGTA
TGACCCGTCGAATGGCCTTGTAGTGGACTTGGCTGTAGTTGGTGGAGGTC
CTGCAGGGTTAGCGGTAGCACAACAAGTTTCTGAGGCAGGACTTGCGGTT
GTGTCTATAGACCCTTCTCCAAAATTGATATGGCCAAACAATTATGGTGT
TTGGGTGGATGAGTTTGAGGCTATGGATTTGCTAGATTGCCTTGACACTA
CCTGGTCAAGTGCAATTGTTTACATTGATGACCAGACAACCAAAGAGCTC
GGAAGACCGTATGGAAGGGTTAACAGGAAGCAGCTTAAATCTAAAATGAT
GCAGAAGTGCATATCAAATGGAGTTAAATTTCATCAGGCTAAGGTTGTAA
AAGTTGTACACGAGGAAGCTAAATCCCTATTGATATGTAATGATGGTGTG
ACCATTCAAGCTGCTGTAGTTCTTGATGCAACCGGTTTTTCAAGATGTCT
TGTTCAATACGACAAGCCATATAATCCAGGATACCAAGTAGCTTATGGAA
TAGTGGCAGAAGTAGAAGAACATCCTTTTGATGTAAATAAGATGATTTTC
ATGGACTGGAGAGATTCCCATCTTAATGGCAATACAGAATTAAAAGAAAG
AAACAGTAAAATCCCTACGTTTCTTTATGCTATGCCTTTTTCATCTGACA
GAATATTTCTTGAAGAAACATCCCTTGTAGCTCGTCCAGGTTTAGCCATG
GGAGATATTCAGGAGAGAATGGTGGCTCGCCTAAGGCATTTGGGTATTAA
AGTGAAGAGCATTGAAGAGGATGAGAGATGTGTGATCCCAATGGGAGGGC
CTCTGCCTGTACTCCCTCAGAGAGTAGTGGGAATTGGCGGTACAGCTGGT
ATGGTGCATCCTTCCACTGGATATATGGTAGCAAGAACTCTAGCTGCTGC
ACCAGTTGTTGCCAATGCAATAGTTCAGTACCTTGGTGGTTCTAAGAAAG
GCGCTTTGGGAAACGAATTGTCTGCAGAAGTCTGGAAAGATCTATGGCCA
ATAGAGAGAAGACGCCAGCGAGAATTCTTTTGCTTTGGTATGGATATTTT
GCTAAAACTCGATTTGCCTGGTACAAGAAGGTTTTTCAGTGCTTTTTTTG
ACCTGGAACCTCGCTATTGGCATGGATTCTTGTCTTCTCGACTATTTCTT
CCTGAACTATTCTTTTTCGGGCTTTCTCTTTTCTCAAATGCCTCCAACAC
TTCTAGAATAGAGATCATGGCAAAAGGCACGGTTCCTTTGGTAAACATGG
TAAACAATCTGATCAAAGATAGAGAATAGTCATTTTGTGATTTTGACTCA
TTGTGTTATAAATGTTTGTATGTTCTCTGATCATAAATCTAGTTCAAAAT
GCTTGTGAAGTTACACATCTTGGTCGTCCACTTTCTATTCTGTGAACTGT
GAGTTTGCACGTTGCTTACAGGAGATAGGAATTATAAAGTATGTGCAATA
TCATGAGGTAGTAAAAACTGATTGAGAGTTCTCAATTTTTGCTTGGATTT
GTAAATAACTCCTAATTTTTTACGGTATACATATACTACCAGATCGATGC
ATATAAAGTTTAATGTTAGATG

Sequence Length

2272

Sequence MD5 Checksum

b41583d8d6ec9d26588b3cbe5e54f5e4

Relationship

The mRNA DCAR_020544 is a part of Gene DCAR_020544
The Genetic Marker MK000039 LCYB is located in Gene DCAR_020544

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False