Genome Annotation Search
| Name Sort descending | Description | |
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| Carrot Genome Assembly DH1 v3.0 | A multi-step approach was used to predict the most comprehensive gene model catalog for the carrot genome v3. MAKER and GeMoMa were used to perform gene prediction based on the integration of de novo gene prediction and evidence-based predictions… |
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| GCA_040143745.1 | We inferred gene functions based on the best match of the alignments to the National Center for Biotechnology Information (NCBI) Non-Redundant, TrEMBL, InterPro, and Swiss-Prot protein databases using BLASTP (NCBI BLAST v2.11.0+) and the Kyoto… |
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| GCF_001625215.1 | The RefSeq genome records for Daucus carota subsp. sativus were annotated by the… |
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| LNRQ01000000 | SSRs were detected in the Daucus carota V.2 assembly (LNRQ01) using misa, and when possible primers were designed with primer3. misa detection parameters 2-6 3-4 4-3 5-3 6-3 7-3 8-3 and interruptions 10 This analysis has not been… |
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| LNRQ01000000 | Coordinates of 4028 DcSto insertions belonging to 14 families were compared to coordinates of ca. 32 thousand genes annotated in the carrot reference DH1 genome assembly (Iorizzo et al., 2016; NCBI accession LNRQ01000000). 609 gene-associated… |
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| PRJNA285926 | For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets… |