Daucus carota genome V.2 SSR Detection with MISA
Name
Daucus carota genome V.2 SSR Detection with MISA
Type
Genome annotation
Description
SSRs were detected in the Daucus carota V.2 assembly (LNRQ01) using misa, and when possible primers were designed with primer3.
misa detection parameters 2-6 3-4 4-3 5-3 6-3 7-3 8-3 and interruptions 10
This analysis has not been published.
Data from this analysis can be viewed in JBrowse here.
Program, Pipeline, Workflow or Method Name
misa; primer3
Program Version
misa 14/12/01 (version 1.0); primer3 2.3.6
Name
LNRQ01000000
Data Source URI
Publication
- Thiel T, Michalek W, Varshney RK, Graner A. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2003 Feb; 106(3):411-22.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.