Carrot Genome Assembly DH1 v3.0 Regulatory Gene Annotation
Name
Carrot Genome Assembly DH1 v3.0 Regulatory Gene Annotation
Type
Analysis
Description
PlantTFcat, a reference plant transcription factor and transcriptional regulator categorization tool, was used to predict the transcription factors and regulatory genes in v3 gene models as well as the DCARv2 genes for comparison purposes. The data from this analysis is presented in supplementary table S17 in the carrot genome publication.
Software Name
PlantTFcat
Software Version
2.0
Data Source Name
Carrot Genome Assembly DH1 v3.0
Relationship
The Analysis Carrot Genome Assembly DH1 v3.0 Regulatory Gene Annotation is a part of Genome Assembly Carrot Genome Assembly DH1 v3.0
Publication
- Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.
- Dai X, Sinharoy S, Udvardi M, Zhao PX. PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool.. BMC bioinformatics. 2013 Nov 12; 14:321.
Biological Sample
SAMN03216637
File
| File | Type |
|---|---|
| DCARv3 Regulatory Gene Annotation | GFF3 |
Organism