Carrot Genome Assembly DCARv3 Gaps

Name

Type

Analysis

Description

This analysis represents the JBrowse annotation of gaps in the assembled carrot genome sequence "Carrot Genome Assembly DH1 v3.0".

This JBrowse track shows all gaps in the genome assembly consisting of runs of 100 'N's, which represent gaps of unknown size. There are 554 gaps in the entire genome assembly.

Software Name

DCARv3 post-assembly annotation of gaps

Software Version

n/a

Data Source Name

Carrot Genome Assembly DH1 v3.0

Relationship

The Analysis Carrot Genome Assembly DCARv3 Gaps is a part of Genome Assembly Carrot Genome Assembly DH1 v3.0

Publication

Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.

Project

Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot

Biological Sample

SAMN03216637

File

File	Type
DCARv3 Genome Assembly gaps	GFF3

Organism

Daucus carota subsp. sativus