XM_017374712.1 | CarrotOmics Tripal4

Gbkey

mRNA

Gene

LOC108204981

Model_evidence

Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns

Name

XM_017374712.1

Organism

Daucus carota subsp. sativus

Product

small RNA 2'-O-methyltransferase, transcript variant X2

Transcript_id

XM_017374712.1

Type

mRNA

Unique Name

XM_017374712.1

Sequence Residues

TATACGGCAGTCGCTCCTCTAAAACCCCAGACAGTCAAGTGGAAGTCTTG
AAACACCTGACTGATTCTCTTTTGTTTTACTCTTGTCTGAAATCAAACCC
CTTTTCCATAACAACCTCAATTATACGCTCTTTCAACGTCCGTACATTCA
ACCCATTTTTAAGGGCTGTTGATCATTTGGGAAAGGTGTAATGGGATCTC
AAGAAAACCCAGTTCTTGCCTTGAAGCAAAAGACGCTTACCCCGAAAGCT
ATTATACACCAGAAATTTGGGGCCAATGCAGTGTACAAGGTCGAGGAAGT
AAAGAAGTCTGCTGATGATGGAGGCCCGCGGCTTAATTTACCACAGAAGG
GTCCTTGCCTCTTTCAATGTTCTCTGCAACTTCCGGAAGTTACTGTTGTT
TCTGAGCTGTGTAAAAAGAAAAAGGATGCTGAGCAATCTGCTGCGGAGAA
GGCTATTGAAAAGCTCGGCATTACCTTGAGTATACCCACCGCGCAAGAAG
CAGGGGATGAAGTGGTTGGTCGTCTCTCATATTTATTTTCAGATACGTTC
TATACGACTGTTCATCCGTTGAGTGGTCACTTCAGGGCAGCCTTGCTGAG
AAAGGACCAATTCTATGGTTATGTCCCTGTTTCCGTGATATCCTTTTTTG
ATTCAAAGCTTTTAAATTTATGCAAATGCATAAATCCTGAAGTTGAGACC
AATTCATGGTTGGCGGTGCCACTAATTTTGAAGGCTGCTGCTAGAGTACC
ATTGTTAATTTCTGAGGATCATCTTTCAATACGAAGGCCAAGTCCCTATC
CTCCTGAAGTTCTGCAGGCTGTAGATAATCAGCTATCAAACTTGCCAGAA
AGCACTTGTATTAGAGCAGTACGCATCCCATGCTTAGTTGATAAGATTGT
TGAACCCTTGCTTTTTAATATTTCTATTAATGGGTACTATCTTGATGCTA
TTGCACAAGAGCTTGGTGTAACGGATGCCTCTAAAGTTCTGGTTTCCAGG
AGTGTTGGCAAAGCTTCATCAGAGACTAGATTGTACTTCTGTACTCCACA
GTCGTATATGCTGAATGTATCCTCGGAGTTGGGTGAAGAAATAACAACTG
ATGGAACTTTAAATACAAGAGCAACTTTCCTATCTGGTCAAAAGATCTAC
GGGGATGCAATATTAGCCTCAGTTGGGTACACATGGAAGTCTACTGATAT
CTTCTATGAAGATGCATCCCTGCGTTCATATTTTAGGATACTTATTAATA
AGGTGCCAGATGGTGTTTATAAGCTATCTAGGGAGGCGATATTGGCAGCA
GAAATGCCTACAGCATTCACCACAAGAAGCAATTGGAGGGGATCTTATCC
CAGGGATATCCTCTGTACGATTTGCCGCCAGCATCGGTTATCTGTACCTG
AAATTATCTCCTTGGAAAATGCAGAAGTGCCAGGAGTACATAAGAAAATG
AAGCTTACAGATCCTCGTGAACAAGAAACAAATGGAGGTGGTGTTGCTTT
AGGTGTTGCTGGAGTCGGAGGAACTTTCAAGTGTAAAATAAAAATATTTT
CAAGGAGTCAGGAACTGATTATGTGTTGCACCCCAAAAGAATCATTTAAA
AAGCAAAGTGATGCCATCCAGGATGCTGCACTGAAAATTCTCACATGGCT
GAATAATTACTTTCAAAACCCAGAGATATCTGTTGAGAACTTGACTACAT
CTGGTCATGAAATTGATATCCAATTTTATCCGCAGTGCTTCTTTAAGGAG
TTCAAACTATACCAATCAGTGCATAATTCTAGCAGATTGCTAAATTCTGA
CTGCTTGAGTAGAAATACAGGGTTTTTAAAATCTACCATGTTTTCAGTAA
ATGACAATGATCAAATGTTAGGAGTTTCATTATCAACTGGGTCATTGGCG
TGCATTAGTTATAGCATATATCTATTGGCAGGAGAATGCATGAAGGAACA
ACTTGAAAGTAGTGAAGAGTTTGAATTTGAGATAGGGGTTAAAGCCGTGT
CCCCCCATTTTGAAGCTGTTGTGACACAGATGTCTTTGGGTCAGTCAATT
TCTTATAATAAGGAAGTGCCGTCCATTGAGTTAATTATGGCTGCTGCTAC
TGATCCTGAAAGAATTCTTTCGCTATTGAATTCAGGAGGCTGCAGTTTGG
AGTACTCGATTACTTTACTGCGGGTGACAGAACCCTTGGAGGAGAGAATG
GAGCAGGCACTCTTTAGTCCTCCTCTATCGAAGCAGCGTGTTGATTTTGC
ATTGCAACAAATTAAAGAATCTTGTGCAGCTTCCTTGGTTGACTTCGGAT
GTGGGTCTGGAAGCCTGTTGGAATCCTTGTTAGCATATCCGACTTCTTTG
GAAACGATTGTTGGCGTTGATATTTCACAGAGGAGTCTTGCCCGGGCAGC
CAAGATACTACATACCAAACTAACTACCAAAACAGAAGCTGGAAGTAGTA
GAATCAAATCTGCATTGCTTTATGATGGTTCAATCACAAGTTTTGATTCT
CGGCTGTATGGATTTGATATTGGAACTTGTTTAGAGGTGATTGAGCATAT
GGAGGAGGATCAAGCCTTTCTATTTGGTGATGTTGTGCTAAGCAGCTTCC
GTCCGAAAGTTCTGATTGTTTCGACCCCAAACTTTGAGTACAATGTAATA
CTGCATAAATCTACTGTACAAGGTCCAGAAGATGACCCAGACGAGAAAAA
TCAATCACAGTCCTCTAAGTTTCGCAACCATGATCACAAATTTGAGTGGA
CCAGAGAACAATTCAATGACTGGGCGACAAAGCTTGCAGAGAGGCATAAC
TACAGTGTTAAATTCAGTGGAGTTGGCGGGGTTGATGGTGTGGAACCAGG
GTATGCTTCCCAAATTGCTGTATTTAGGAGGGAAGGCGATGACTTTCCGG
AAAATGTCAGCTCGGCTCATCACTATGATATAATATGGGATTGGAGCAGC
AACAGTTCAAGTTCACTCGAGTAAATGTAGTATATTCAATTTTTGCTCTA
ATATATTCTCTTTATATTGGAGACACTCATTTTCACGACTAGTGGATGCA
CATCATTAGTTTATGGAGAAGATGGAGTTAAAAACTAATTGCCTTGTCAG
AAAGGCTAATTTCTCAGTGATATATTCGACCTGATACCGTGCATTACAGT
AGTTTACAAGTTTTTCTGTTGA

Sequence Length

3172

Sequence MD5 Checksum

c81b7edf1bb0152aa5aeaa934066ed98

Relationship

The XM_017374712.1 derives from mRNA XM_017374712.1
The mRNA XM_017374712.1 is a part of Gene LOC108204981
The XP_017230201.1 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon10 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon9 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon8 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon7 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon6 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon5 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon4 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon3 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon2 is a part of mRNA XM_017374712.1
The XM_017374712.1.exon1 is a part of mRNA XM_017374712.1

Database Reference Annotations

Analysis

Is Analysis

False

Is Obsolete

False