MK000045 CHXE
Marker_type
STS-Sanger
Name
MK000045 CHXE
Organism
Type
genetic_marker
Unique Name
MK000045_CHXE
Sequence Residues
GAAAATCAACAAAAAGTTTGAGTTACCAAACTCCCAAACATGCCTTACCA
TTCTATCTCATCTCTCTCGCTCCTCCCCATTCCTATCCGCCAAAACTTGT
CCAAACACCACCCACCATTTCATCAACCACCTCACTCACTCCCACTCTCC
ATCAAATCTTCACTCGACAACAAGCCACCCAAGTCCAACCAAGGCTCATG
GGTCAGCCCAGACTGGCTCACTTCTCTTACCAAGTCTATCACTCTCAGCA
AAGATGATTCCAACATACCCATTGCCAGCGCAAAGCTTGAAGACGTGTCT
GAGCTTCTTGGGGGTGCTCTTTTCTTGCCATTGTTTAAGTGGATGAATAT
GTATGGGCCCATTTATAGGCTTGCTGCTGGGCCGAGAGATTTTGTGGTGG
TCAGTGATCCAGCTATTGCTAAACATGTTTTGAGGAATTATGGCAAGTAT
GCTAAAGGTCTTGTTGCTGAGGTTTCTGAGTTCTTGTTTGGCTCTGGCTT
TGCCATTGCTGAAGGCCCTCTTTGGACGGCGAGACGCAGGGCTGTGGTTC
CTTCGCTTCACAAGAAGTATTTGTCAGTGATGGTTGACCGGGTGTTCTGC
AAATGTGCCGAACGACTGGTGGAAAAGCTTGAAATTAGCGCATTAAATGG
CTCTGCTGTGAATATGGAGGAACAGTTTTCTCAGTTAACTCTGGATGTTA
TTGGTCTATCAGTGTTCAACTACAATTTTGATTCGCTTAATGCTGATAGT
CCTGTTATTGAAGCAGTTTACACTGCTTTAAAAGAAGCAGAGGCTCGATC
AACTGACATATTACCATATTGGAAGATTGAAGCATTATGTAAGATTATCC
CGAGACAAGTAAAAGCTGAAAAAGCTGTTACAGTGATTAGAACAACAGTC
GAAGAACTGATCGAGAAGTGCAAGAAGATTGTGGACACTGAAGGTGAAAG
GATTAGCGAGGAGGAGTATGTAAATGAAGCCGATCCTAGCATTCTACGGT
TCCTGCTAGCCAGCAGAGAAGAGGTCTCAAGCACACAGCTGCGAGATGAT
CTTTTATCGATGTTAGTTGCTGGCCACGAGACCACCGGCTCTGTGTTGAC
ATGGACATCATATCTTTTAAGTAAGAACCCTTCTTCTTTAGTAAAAGCCC
AAGCAGAAGTTGATAGAGTTTTAGAAGGAAGGCCTCCTACATATGATGAC
ATTAAGAATCTCAAGTACCTGACACGCTGCATAAATGAGTCGATGCGTCT
TTATCCACATCCTCCTGTTCTGATTCGAAGAGCTGAAGTTGCTGATGAGC
TTCCTGGGAGCTACAAGGTTAATCCTGGGCAAGACATAATGATTTCTGTA
TATAATATCCATCATTCTTCAAAGGTCTGGGACAGGGCAGAAGAGTTTAT
TCCGGAAAGATTTGACTTGGATGGCCCGGTGCCAAATGAATCAAATACTG
ATTATAGATTTATCCCATTCAGCGGAGGTCCTCGCAAATGTGTAGGTGAT
CAGTTTGCTTTACTGGAAGCAATTGTGTCGCTAGCTATATTCCTGCAGCA
CTTGAGCTTTGAGTTGATTCCAGATCAGGTTATCAACATGACAACAGGAG
CCACTATTCACACAACGAATGGATTGTACATGAAAGTGTCCAAGCGGCAA
ATCAAATCAGCAGCTGTTTCCTCAATATCTAGGTAAACTTTATAGTTCTG
TACATAAAAGTGGCAATATGTTGTATAGAATGTGGGATGATGAAGGTGAT
CCACTGAGGCTTCGACTCTATTGATTTATTAACCGAGAAAGAACATTCAT
TTA
Sequence Length
1803
Sequence MD5 Checksum
dd77890c4a573f45c73bc046aaef46a7
Relationship
- The CHXE is an instance of Genetic Marker MK000045 CHXE
- The Genetic Marker MK000045 CHXE is adjacent to Primer CHXE-5'UTRendF
- The Genetic Marker MK000045 CHXE is adjacent to Primer CHXE-5'CDSendR
- The Genetic Marker MK000045 CHXE is adjacent to Gene DCAR_017658
- The Genetic Marker MK000045 CHXE is located in Gene LOC108220021
Synonyms
- MK000045
- A6F01
Database Reference Annotations
Publication
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Brian James Just. Genetic mapping of carotenoid pathway structural genes and major gene QTLs for caroteniod accumulation in wild and domesticated carrot (Daucus Carota L.). Ph.D. Thesis. 2004. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Is Analysis
False
Is Obsolete
False