DCAR_020208 | CarrotOmics Tripal4

Cds

>DCAR_020208cds ATGTCGACCGAAAATAATAATAACAACAATGTCAACAACCAGAATGCAAC ACCACCACCGACTGAGATCGGCTCTGATGATTATCGAGGAGGAGCAACTT CAATTGAGAAAGTAAGCAGTAGTATATCACTTGATTTAAATTGCTTGCTT ATTGATATTCTCGAGTTATATATCGAAGAAAATTATACCAAAATCCGTGA TGTTGAGAAAGAGCTTACAAATCTTAATTTAGAGATGAAACTTACAGCTG GGCCAAAAAAGGCAGCACTTGAACACCTGAGAAAGAAAATTGAAATGTCA ACTGAGAAGATTCGTCTTGCCAAGCTGAGGGAAGAACAAGCACGGAAGGT ATTGGAAGAAGCGACAAAAGCTGTCAAGGATGAGGAAGCAATAAAGCAGA ACCTGTGTGAAGACTTAAATCGTCTGGTTCAAGAAAGTAACAATACCCAG TTTGCAAGACTTGGAGAGTTAAAAAGAAGACTAGAGGCTTTAAATCCTGC CAGATCACCCACCATCTCTCATGATGAGAGTACTGTACAGAGCGCCACAG CTCCTGTTGCAGTAATAGCTCATTCACCGGAGACATCTGTAGGATTGCCT GGCAATCTTGCTAATCCAGGAAATGCCGGAGTTACTACAGTGGCAAACGG CCAGAATCAACAACCACATGTTGATGAAGGAAGGAAGAAGAAAACTGTAG TCCAAGGACGTGGAAGAGTTGGAGCAGTACCCAAGGGTAGAGGTCAGCCA GGCTGGACAGGAGCTGGGTTCGATGTGGATGGTAGAAGCTGA

Locus_tag

DCAR_020208

Name

DCAR_020208

Organism

Daucus carota subsp. sativus

Pep

>DCAR_020208pep MSTENNNNNNVNNQNATPPPTEIGSDDYRGGATSIEKVSSSISLDLNCLL IDILELYIEENYTKIRDVEKELTNLNLEMKLTAGPKKAALEHLRKKIEMS TEKIRLAKLREEQARKVLEEATKAVKDEEAIKQNLCEDLNRLVQESNNTQ FARLGELKRRLEALNPARSPTISHDESTVQSATAPVAVIAHSPETSVGLP GNLANPGNAGVTTVANGQNQQPHVDEGRKKKTVVQGRGRVGAVPKGRGQP GWTGAGFDVDGRS*

Sequence Coordinates

DCARv2_Chr6:33311281..33314822+

Type

gene

Unique Name

DCAR_020208.gene

Sequence Residues

ATGTCGACCGAAAATAATAATAACAACAATGTCAACAACCAGAATGCAAC
ACCACCACCGACTGAGATCGGCTCTGATGGTCTTCCTCGAGAATCTTCCG
TCGTCTCCTACACCGAAAAGGTCTCTCTCTCTTTCTCTCTCTCTCTCTCC
CTCCCTCCCTCTCTCTCTCTCTCTCTCTCTTATATGATGATTGATGTAAC
TGATCTCTGTTGTTTCAGATTATCGAGGAGGAGCAACTTCAATTGAGAAA
GTAAGCAGTAGTATATCACTTGATTTAAATTGCTTGCTTATTGATATTCT
CGAGTTGTATAATATTTATTTTTTGTTAATTATACTTTCTCTTTGTATGA
AACCGTGATTCAATTTGCTCGAACTTCTAATGTAACGCAGTACACACTCT
GTGGGACTAGATTAAGTAGTTTAGGGTATTGTATTCTGTATTACTCAAAT
TTATAAGTGACGCTTCGTTTTAACAATGTCTAAGATTCTACTCTACTAGG
ATAAAGTTTAAATAGGACTTTCACTAATCATCTGAAGCGATTGTTTTGGT
TTGCTAAGATTGCGGAGAGAGGATGTTAATACTGTGACAACTGAGAATGA
TAACTGTGGTACCCTAAAATTGTATTGCGAACAGAGTTTCCCGAAATTTC
AAGCTACTTGATCAATATGAGGTCTCATTGCCCTAATTAAGTATTATGTA
GCTGTCTCTGGACGTGTCTGCTAGCATATTCTTATTAGAGCCATTTCAAA
CCTTGCTTGTTTGTGAGAAGTCCTTAATTTTCCATTCTGCTTTCACTAAG
GTTCTATAGATGAGTCCTGTATGCGTTAATTTACAGGATGATCTGAATTG
ATCAACATATTGCATAGTTTTCAGTTTTTACCTCCATCCATCTCCTTGTA
ATACTTAATAATGTGTTTGCTAGATGCATCTCTTTATTTTCTAATTGCCC
AAAATTTCGTACTTAAGCTCCCTGGCCTTTCCTTAACTCCTCTTGGCTCT
CAGATATATCGAAGAAAATTATACCAAAATCCGTGATGTTGAGAAAGAGC
TTACAAATCTTAATTTAGAGATGAAACTTACAGCTGGGCCAAAAAAGGCA
GGTTAGTGTACTTCCTCAATAATTTACATATTTTCTAATGACATTTTCAT
TCCAATAATCACAGTAATCATTTTTTCTGTTTCCTGTTCATGAATGTCCA
TTAGCACTTGAACACCTGAGAAAGAAAATTGAAATGTCAACTGAGAAGAT
TCGTCTTGCCAAGCTGAGGGAAGAACAAGCACGGAAGGTCTGTCTCTTTG
ACCTAACTCAAGAGTACTTATCCAATTGGCTGCATTATCCATTCTATCAT
CACAAAAGATACTTTTATCTCTTTATATTGTGCTTATAATTTTGATCAGC
TTTTTCGTCATGGTAATATTAAAGTCTTGCTGAACATAGTCGGGGTATGC
TGTTGGTTTAGTTAACTAGTTCAGCTAGTATCTCTGTGATCTTTAAATAA
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT
TATTATTATTATTTTTATTTTTATTAGTATTATTAGTATTTACTACAGCT
TGGAAACTTTCTGATTATTGAGTTTTAACTATTCTATATGAAGTCAACTA
TAAATGGAAATTTTGTACTAGAGCAATCATTTCATGTATAAATATGAAAA
GACATTTGCACTAGTTTATTCTTTCAGGGTCTCTAAACCTTTAATATAAA
AGCCAGATTTTTATATCCAAAATGGTCTTGTCTCTTGTATTAAAAAACCT
ATCATGTTGATTCTTGTTAGGCTATCTTCATATTTTTACTACAGAGACCT
GAAATTGATATTTAAATTGTGATGCCAAGTCACATAGAGCTACATCTGGC
ATTCTGGCTCTATCAAACATGGCCATATGTTGACAGGTAGAAAGAAAAAT
TAATGTTCAATGTAGCCATCTAGCTTTTAGCTTTCTATAATAGAAGGTGC
TTTCATACACTTCCTCTGCTCCAGAATAAGGATGGACAAATGTCAGAGTT
GAATCAAATATTTTTAGGTTTTGGGGGGTAAAATGTATTCCATTTTTCTC
CCTTTAGTTAAGAATAAAGTCACTTTAGACTACTAAAAGAATTTAATCTG
ACATTATTCATTATTGTTATGGATTCTTAAGTACAATTTTTATTTTTATT
TTTATTTTTGCAATTACATATATGTAAAACTTTGTGCAAAGTAGTACAGA
TAACATATTATTACTGCATTATATTAAATGAAGTGAAGAAAAAGAATAAC
TCATAATGCTTTGGAACTTGAGATGTCAGTATTTAAAAGTTAAGGTACTA
AAGTGCATTTAGGATGTAACTTCTTACACTACAATTATAGTATGTTGATT
ATATTAGCAAAGTGCAATCAGTTTAAAATATGCCAGTTGTGTAGTATGTC
CACTGCTACAGCTAATATAAAGTGTTTCTTTCTTAAGGTATTGGAAGAAG
CGACAAAAGCTGTCAAGGATGAGGAAGCAATAAAGCAGAACCTGTGTGAA
GACTTAAATCGTCTGGTATATGATATAAATTTATCTAAAATTGACTTTTA
TTGAAGCTCCTGCCATCAGTTTGTTGTTCTAATATTGATTCTGTAATTTT
TTGTGACACAATTCATCTTTGTAGGTTCAAGAAAGTAACAATACCCAGTT
TGCAAGACTTGGAGAGTTAAAAAGAAGACTAGAGGCTTTAAATCCTGCCA
GATCACCCACCATCTCTCATGTCAGTAACTAACAAGTTTTGCATGTAGTC
CTCTTCATTTAATTCTTGTTAACATGTGAAAAAAGTGTATCCAGGTTCAG
GAAGTTTTCTCACTTGCAAATGTATACTAAATGTTATATTGTGAAATATT
TTTGCAGCAACAAACTCTTAACTCTTAAGGTTGTTCAATGGCGTGGTCTA
AATGTCATACTATAGTTACTAAACCTTCAGCAGTTGTTGCATAACAAAAA
AGTATATGTTCACCTTCTAGCATTGCTACTATGGTTTTATCAAATCTTGA
TATATAATACCTTTCTGCAGCTGCTCAGCCTGGCTACAGCTTTTAGTACC
ATCAATGATTATTAAACACCATCAATAATGCCTTTCTGCCATATGTTTTG
AATGTGCTTCCAAACTATAATTGCATTATTTATCAAATTAAGACCTTCTG
AATACTAATTTCTTAACTTATCATGTGAATGCGGAAAGAAGTGCCATAAT
TGTTGTAAATTGTATTTTTAGGATGAGAGTACTGTACAGAGCGCCACAGC
TCCTGTTGCAGTAATAGCTCATTCACCGGAGACATCTGTAGGATTGCCTG
GCAATCTTGCTAATCCAGGAAATGCCGGAGTTACTACAGTGGCAAACGGC
CAGAATCAACAACCACATGTTGATGAAGGAAGGAAGAAGAAAACTGTAGT
CCAAGGACGTGGAAGAGTTGGAGCAGTACCCAAGGGTAGAGGTCAGCCAG
GCTGGACAGGAGCTGGGTTCGATGTGGATGGTAGAAGCTGA

Sequence Length

3541

Sequence MD5 Checksum

6b6bf7780707dd5f13b1612489f456e0

Relationship

The mRNA DCAR_020208 is a part of Gene DCAR_020208
The Genetic Marker MK016718 SSR0348 is adjacent to Gene DCAR_020208

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False