DCAR_020269 | CarrotOmics Tripal4

Cds

>DCAR_020269cds ATGGCGGCCGGAATCTCGGCGGCCTCCAGCTCCACCTCATTCTCTCTGGG CCGCAACCCATTTCTCGGGCCCAACCCCATTTGGCTCTTCGCTCCATCCG TCCGAAAACTAAACCCGTCTCTTCGGTTCAAACAAAAGAGCTTAACCACT GTTTGTTTTGTGGTGGAGCCCCGAAATGATAGCTCGGGTAAGCCCGAAAA TAACGCCGACCGAGATGAAGTGAGTCGCGAGGAGATTGAGGCGGGGAGTT GTTCCGTACGAGTTGAGGAGAGAAGAGCGAGGAAGAAGTCGGAGAGGTTT ACGTATTTGGTGGCGGCGGTTATGTCGAGTCTTGGCATTACTTCTATGGC TGTCTTGGCGGTTTATTACAGATTCTCTTGGCAAATGGAGGGTGGCGAAA TTCCGTATTCGGAGATGATTGGTACATTCGCTCTTTCTGTTGGTGCTGCT GTGGGGATGGAATTTTGGGCGAGATGGGCACATGAAGCCTTGTGGCATGC TTCTTTGTGGCATATGCACGAGTCACACCATAAACCGAGAGAAGGAGCAT TTGAGCTGAATGATGTATTTGCAATAATGAACGCTGTTCCTGCAATAGCT TTGCTAGCTTATGGTTTCTTCCACAAAGGCTATTTTCCAGGTCTCTGTTT TGGTGCGGGCCTGGGAATCACAGTATTTGGAATCGCTTACATGTTTGTCC ACGATGGTCTTGTTCATAAACGATTTCCGGTAGGTCCCATCGCCGATGTC CCTTACTTCAGAAAAGTTGCTGCTGCTCATCAGCTGCACCACATGGAAAA GTTCAAAGGAGTCCCATATGGGTTGTTTTTGGGTCCTAAGGAAGTTGAGG ATGTGGGAGGACACGAAGCGTTAGAATTGGAGATCAACAGAAGAATCAAG TCATCTGCTTCCAGAGCTAGCCGATCATAG

Gene

BCH-1

Locus_tag

DCAR_020269

Name

DCAR_020269

Organism

Daucus carota subsp. sativus

Pep

>DCAR_020269pep MAAGISAASSSTSFSLGRNPFLGPNPIWLFAPSVRKLNPSLRFKQKSLTT VCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERF TYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAA VGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIA LLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADV PYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIK SSASRASRS*

Sequence Coordinates

DCARv2_Chr6:32856359..32858738+

Type

gene

Unique Name

DCAR_020269.gene

Sequence Residues

ATGGCGGCCGGAATCTCGGCGGCCTCCAGCTCCACCTCATTCTCTCTGGG
CCGCAACCCATTTCTCGGGCCCAACCCCATTTGGCTCTTCGCTCCATCCG
TCCGAAAACTAAACCCGTCTCTTCGGTTCAAACAAAAGAGCTTAACCACT
GTTTGTTTTGTGGTGGAGCCCCGAAATGATAGCTCGGGTAAGCCCGAAAA
TAACGCCGACCGAGATGAAGTGAGTCGCGAGGAGATTGAGGCGGGGAGTT
GTTCCGTACGAGTTGAGGAGAGAAGAGCGAGGAAGAAGTCGGAGAGGTTT
ACGTATTTGGTGGCGGCGGTTATGTCGAGTCTTGGCATTACTTCTATGGC
TGTCTTGGCGGTTTATTACAGATTCTCTTGGCAAATGGAGGTATATACTT
GCCTCCTAGTCCCGGCTGACTCGAAAAAATTATTTAATTTTGTTATTCCA
AGCCTAGTTTCGGGCTTAATAATTGTACAAATTTTGTTCTTAAATGAACA
CTGCTACTGAAAATCCCTTGATATCTTACTACTAGAAGTTTTAACAAGCT
CTGAAATTTAATATAATTTTTTCTTGTGCTAGGGTGGCGAAATTCCGTAT
TCGGAGATGATTGGTACATTCGCTCTTTCTGTTGGTGCTGCTGTAAGTTC
CTATGTGCTTATTGTTATATAGTTTTGGTGTCTCCAATATGTTTGCAATG
TGTTTGATTTTTTTGCCAGCAGCCTTGGCAATTTTGGTTCGGGTTGTGTT
TGTTAACGAGTAACTTAAACTTACTGAGATTTGAATTTGATGAAAAAGGG
AATATTCAAGTATGAAAGAATATGTAATGATGATATCGGGTCAAGGTTAT
GCTAGCAGTGTTATGGCATTTGTAATACTCGGTCTGGGATGCTTTTTGAT
AGTTTCTGATTGATTGACAATTTCATTGTAAATTTTGGGATGAATAGTGG
TGTTATGGAAATTTTCAGGTGGGGATGGAATTTTGGGCGAGATGGGCACA
TGAAGCCTTGTGGCATGCTTCTTTGTGGCATATGCACGAGGTATTTGTAA
TTGTAATATGCACACTGTGCGAATCCATGTTCTTGATGTATAAATTTTAT
CAGTTACGTCGTTCTTTTAGGCAAAAAGCAGACTTTGTAAGCTCAATATA
TTATAGCAGATGGACATGAATTTGATTGTTGTATAGTTGTTACCTTTGAG
TTTTTAGCACATCTCATGTATATTTTGAAAGTTGTATATTTGTTTTGCCT
ATAGTCACACCATAAACCGAGAGAAGGAGCATTTGAGCTGAATGATGTAT
TTGCAATAATGAACGCTGTTCCTGCAATAGCTTTGCTAGCTTATGGTTTC
TTCCACAAAGGCTATTTTCCAGGTCTCTGTTTTGGTGCGGTATGTCTCTT
TTGTTGTAACCTCATTATACTCCACTAGTTAACTTGATATTTCCTACGTA
CAGATGAATTGACACTTCATTAACAACTCTGTTACCTATCACTGTATGAC
AACTATATGAAATGCCTTACTAATGTTAAAAACACATTCAATTCACGATA
ATAAAACAAAACTTAGAGTTTAATTTGTTACGGTGCAGAAAAACCACCTT
ATAAATATTGCATTAAACAATAACGACATGTTAAAGGCAGAATGTATTTA
AGTGGTGAGTTATTGTGATTGTGATAATAGGGCCTGGGAATCACAGTATT
TGGAATCGCTTACATGTTTGTCCACGATGGTCTTGTTCATAAACGATTTC
CGGTAGGTCCCATCGCCGATGTCCCTTACTTCAGAAAAGTTGCTGCTGCT
CATCAGGTGATTACTATATTGGTTAACTTCTTAGTTAATGTACTAATTAC
TTGCAGTACAGTATTTTAAGCATTAATAATCAGGTTAGCAGCTGTGATCC
CTATGTTAACAAACTTTTATGTAGTACGTTAAGTAATTAAATCTTAAGAA
CTAGTGCTACTGCTCCATAGGATTAATTAAACATTTTTCGTGATATTGAT
CTGTTATATTTTATTAACACCGTGATCTTAGCTGATACTGATGTTTTGTT
TATAGCTGCACCACATGGAAAAGTTCAAAGGAGTCCCATATGGGTTGTTT
TTGGGTCCTAAGGTATATATATGTTCATGCATGTGGTCCTTGGTGTTTCT
CTTGCCTCTTCTGGCTTCTTCTCTTCATACTTTCTCCTCAAGTGGTTATT
TGTACTTTGCTTATATAAATTAAAAAGTCATATAAATCCAAATTATTTGT
ATGTCCCTCCTAGCCTTAATTTGAATATGTGGACTGTAGGAAGTTGAGGA
TGTGGGAGGACACGAAGCGTTAGAATTGGAGATCAACAGAAGAATCAAGT
CATCTGCTTCCAGAGCTAGCCGATCATAG

Sequence Length

2379

Sequence MD5 Checksum

38bc4e81403957fb280275527825e750

Relationship

The mRNA DCAR_020269 is a part of Gene DCAR_020269
The Genetic Marker MK000042 CHXB1 is located in Gene DCAR_020269

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False