DCAR_016697 | CarrotOmics Tripal4

Cds

>DCAR_016697cds ATGGCGTTTATTCAAACCAATACAGCCCATGAAAACTCACTCTTGTCCAA GAATTTACTGTTCGATCATCTCAAAAACACTGGTAAAACCCCATCAAGCT ACTGCACTAGACATCATCCTATGAAGATTCAAGGCGCAAATGCTGTGAAT TCAACTCTTGTCCAATCAGTTAACGTCCAAGAACTCCTGACAAATCCCCG TGTTACGCCTGGTCCAGAGTTTCATTTTGAAGGTTACATGAAAACCTCAG GTAAAAAGATAAACAAAGCGCTGGACGAGGCTGTTCCAGTGCAAAAACCA GCTATCATCCACGAAGCGATGCGGTATTCGCTTCTGGCCGGGGGCAAACG CGTCCGGCCAGTGCTGTGCATCGCTTCGTGTGAGTTGGTAGGAGGGCTGG AGTCATGGGCTATGCCCATGGCCTGCGCCCTCGAAATGATCCACACCATG TCTCTAATCCATGACGACCTCCCGTGCATGGATAACGACGACTTGAGACG TGGCAAACCGACGAATCACAAGGTTTATGGCGAAGAAACCGCGATTCTTG CAGGTGATGCCTTGCTCTCCCTAGCATTCGAGCATGTAGCGGACGCAACC GATATGGTGACCCCGGGTCGGGTGGTTCGGGCTATTGCGGAGCTAGGTTC GGCTGTGGGCTCACAAGGGCTCGTGGCGGGTCAGATAATGGACATATGTA ACCAAGGAAAAGACGTGGATTTGAACGACTTGGAGTATATTCATGTCCAC AAAACATCGAAGCTTCTAGAAGCTTCGGTGGTTTGTGGAGCTATATTGGG AGGTGGGAATGTTATTGAGGTGGAGAGGTTGAGAAAATATGCGAGGTGTA TTGGATTGTTGTTTCAAGTGGTTGATGATATTTTAGATGTTACCAAATCA TCTGCGGAGCTCGGGAAGACAGCCGGGAAAGATTTAGTCACCGATAAGAC GACGTATCCGAAGCTAATGGGATTGGAGAGGGCTAAGAGATTCGCGACGG AGCTGGTGGCTCAGGCGGAGGAGGAACTCAGTTATTTTGGATCGTCAGCA AGGGTGGCCCCGTTGTACCATCTGGCTAAGTATATTGCTTATAGACAAAA CTGA

Gene

GGPS-6

Locus_tag

DCAR_016697

Name

DCAR_016697

Organism

Daucus carota subsp. sativus

Pep

>DCAR_016697pep MAFIQTNTAHENSLLSKNLLFDHLKNTGKTPSSYCTRHHPMKIQGANAVN STLVQSVNVQELLTNPRVTPGPEFHFEGYMKTSGKKINKALDEAVPVQKP AIIHEAMRYSLLAGGKRVRPVLCIASCELVGGLESWAMPMACALEMIHTM SLIHDDLPCMDNDDLRRGKPTNHKVYGEETAILAGDALLSLAFEHVADAT DMVTPGRVVRAIAELGSAVGSQGLVAGQIMDICNQGKDVDLNDLEYIHVH KTSKLLEASVVCGAILGGGNVIEVERLRKYARCIGLLFQVVDDILDVTKS SAELGKTAGKDLVTDKTTYPKLMGLERAKRFATELVAQAEEELSYFGSSA RVAPLYHLAKYIAYRQN*

Sequence Coordinates

DCARv2_Chr5:6575797..6577430+

Type

gene

Unique Name

DCAR_016697.gene

Sequence Residues

TCTAAGTTTGACGTACAACATACACGTTACAATTTTGAGCATAATTGCCA
TTTCTTTCTTGTTTCCTCAGCCCAACTGCACTTGTTAATTTGAGGCCGGA
GCGGTTGTCACATTAAATTAATAAATATCGTATAAATGAAAGCGTATAGA
ATGATTAGAATCTCTTACAACATACCTCTGCCTATTGTGCGAACACTAGA
GTCCAATTCCTTTATTTGAGGCGACTAGAGTCCAATTTACAGGAAACGGA
ATCATTATAACAATGAGAAATCGAGAACAAAAAAAGCATCTAAGTCTCCT
CTTTATATCATACACACATCTTGTACTCCAAATCTTCATCACTAATACAA
ATCATGGCGTTTATTCAAACCAATACAGCCCATGAAAACTCACTCTTGTC
CAAGAATTTACTGTTCGATCATCTCAAAAACACTGGTAAAACCCCATCAA
GCTACTGCACTAGACATCATCCTATGAAGATTCAAGGCGCAAATGCTGTG
AATTCAACTCTTGTCCAATCAGTTAACGTCCAAGAACTCCTGACAAATCC
CCGTGTTACGCCTGGTCCAGAGTTTCATTTTGAAGGTTACATGAAAACCT
CAGGTAAAAAGATAAACAAAGCGCTGGACGAGGCTGTTCCAGTGCAAAAA
CCAGCTATCATCCACGAAGCGATGCGGTATTCGCTTCTGGCCGGGGGCAA
ACGCGTCCGGCCAGTGCTGTGCATCGCTTCGTGTGAGTTGGTAGGAGGGC
TGGAGTCATGGGCTATGCCCATGGCCTGCGCCCTCGAAATGATCCACACC
ATGTCTCTAATCCATGACGACCTCCCGTGCATGGATAACGACGACTTGAG
ACGTGGCAAACCGACGAATCACAAGGTTTATGGCGAAGAAACCGCGATTC
TTGCAGGTGATGCCTTGCTCTCCCTAGCATTCGAGCATGTAGCGGACGCA
ACCGATATGGTGACCCCGGGTCGGGTGGTTCGGGCTATTGCGGAGCTAGG
TTCGGCTGTGGGCTCACAAGGGCTCGTGGCGGGTCAGATAATGGACATAT
GTAACCAAGGAAAAGACGTGGATTTGAACGACTTGGAGTATATTCATGTC
CACAAAACATCGAAGCTTCTAGAAGCTTCGGTGGTTTGTGGAGCTATATT
GGGAGGTGGGAATGTTATTGAGGTGGAGAGGTTGAGAAAATATGCGAGGT
GTATTGGATTGTTGTTTCAAGTGGTTGATGATATTTTAGATGTTACCAAA
TCATCTGCGGAGCTCGGGAAGACAGCCGGGAAAGATTTAGTCACCGATAA
GACGACGTATCCGAAGCTAATGGGATTGGAGAGGGCTAAGAGATTCGCGA
CGGAGCTGGTGGCTCAGGCGGAGGAGGAACTCAGTTATTTTGGATCGTCA
GCAAGGGTGGCCCCGTTGTACCATCTGGCTAAGTATATTGCTTATAGACA
AAACTGAGGACTACTAGATTAATATTATTGTACCAACTACCAAGTAGTAC
TATGTTATGTATGTTGCTTGTTCTGCTGTATCTCTTGTTGGTTTCTTCTC
CAGATGAACATTAGAAGCAAAAGTAAAATATATATGTCATATTGAATTGC
TACGAACTATGAAGAGCATGCACCAACAGTTGA

Sequence Length

1633

Sequence MD5 Checksum

183deed8be28ce2d5ef60b0e2d05c59a

Relationship

The mRNA DCAR_016697 is a part of Gene DCAR_016697
The Genetic Marker MK000032 GGPS2 is located in Gene DCAR_016697
The Genetic Marker MK002641 K0105 is located in Gene DCAR_016697

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False