Carrot Genome Assembly DH1 v3.0 Resistance Gene Annotation
Name
Carrot Genome Assembly DH1 v3.0 Resistance Gene Annotation
Type
Analysis
Description
PRGdb 3.0, a comprehensive platform for prediction and analysis of plant disease resistance genes, was used to predict the disease resistant genes in v3 as well as the v2 for the comparison purposes. The data from this analysis is presented in supplementary table S19 in the carrot genome publication.
Software Name
PRGdb
Software Version
3.0
Data Source Name
Carrot Genome Assembly DH1 v3.0
Relationship
The Analysis Carrot Genome Assembly DH1 v3.0 Resistance Gene Annotation is a part of Genome Assembly Carrot Genome Assembly DH1 v3.0
Publication
- Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.
- Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.
Biological Sample
SAMN03216637
File
| File | Type |
|---|---|
| DCARv3 Resistance Gene Annotation | GFF3 |