DCAR_029160 | CarrotOmics Tripal4

Cds

>DCAR_029160cds ATGGCTCAACAGACGGCCTTGATGGTGGTCAGTTCCTCACTCCGATTCGC GGATTCATTAGTGTCGAGAGTCCAACACGATGGTACTGAAAAATCTGCGT GGAGAACCTGCTTGTTTTTTTACAGTCAAGCGGCTTTTCGGCTCAATAGA AGCTTAGATTCTTCCTTAGGAAGTACAGCTGATGATGTCCAGACATGGCT GAGTGCTGCTGCATCGAATATACGTGCATGCCACGGTGGATTTTTCGATG TTAACGTGACTAGTGATATCTTCCCTCTGGTAATGTTGAACAATGTTACA GAATTGATAAGTAATTGTTTGGCTGTCAACTTCGGTTTTCTGCGACAAGA AGGAATCAGACGTGAAGGCGTGATTAAGCAATCTCAGACAGACAAGGTTT TGAAAAAAGATGGGGCGCTTATGAAACGTGCAGATTGTGTAGTGGCTCAA GATGGCTCTGGAAATTTCAGGACTATTAGGGAAGCTCTGCAGGCTGCAGG TCGAAGAACACGCAGGATTTCGGACTTCGTTATTCGTGTGAAACAAGGTG TTTATTCAGAAATCGTTGAGGTTCGACAAAGTAACATTGTGTTGATTGGT GATGGTGTAGGCAAAACTGTTGTTACTGGGAACCGAAGGGTGGCGGATGG ATTCACCCTCTACGAGAGTGCAACTTTCAAGGTCTCCGGTGACGGATTTA AGGCCGTCGGAATGACATTCGAGAACACGGCCGGTGTAGCAGCAGGCCAA GCGGTGGCAATGGCATCCACAGCTGACCGTTCCGTCTTCTACCGCTGCTC TTTCAAAGGCTACCAAGACACACTCCTCGCTCAATCCAATCGCCAATTCT ACAAAAACTGCCAAATCTACGGCACAGTGGACTTCATATTCGGCAACGCC GCTGCAGTCTTCCAGGACTGCACAATCCACCTCCGAAAGCCCCAACCAGG CGGCGGCCTCGTCGTCACGGCCCAAGACCGAAACGGTCCGCACGAGAACA CGGGCTTCACAATCCACCGAGGCAGAGTCATGGCAGCTCCAGATCTCGCA CCATTTCCCCAAATCAAGGCCTTTTTGGGGAGACCATGGGGGGACTTCTC ACGCACAGTGTACCTGCGTTCGACACTCGACACTCTGGTTGACCCCGCGG GGTGGTTGGCGTGGGGAGGAGCGCCTCCGAGAAGATGTGATACGTTAGAT TACGGGGAGTTTGAGAATCATGGAACTGGTGCATCGACTCATAGGAGAGT TAAATGGCGGGGTTATCGTGTTATACGTGATCGTCGGACCGCGGAAGCTT ACGACGTTGATAGATTGATTAATGGTAAGGTGTGGCTTCCAGGCACCGGA GTGCCGTTTGATGCAGATTTTTGA

Locus_tag

DCAR_029160

Name

DCAR_029160

Organism

Daucus carota subsp. sativus

Pep

>DCAR_029160pep MAQQTALMVVSSSLRFADSLVSRVQHDGTEKSAWRTCLFFYSQAAFRLNR SLDSSLGSTADDVQTWLSAAASNIRACHGGFFDVNVTSDIFPLVMLNNVT ELISNCLAVNFGFLRQEGIRREGVIKQSQTDKVLKKDGALMKRADCVVAQ DGSGNFRTIREALQAAGRRTRRISDFVIRVKQGVYSEIVEVRQSNIVLIG DGVGKTVVTGNRRVADGFTLYESATFKVSGDGFKAVGMTFENTAGVAAGQ AVAMASTADRSVFYRCSFKGYQDTLLAQSNRQFYKNCQIYGTVDFIFGNA AAVFQDCTIHLRKPQPGGGLVVTAQDRNGPHENTGFTIHRGRVMAAPDLA PFPQIKAFLGRPWGDFSRTVYLRSTLDTLVDPAGWLAWGGAPPRRCDTLD YGEFENHGTGASTHRRVKWRGYRVIRDRRTAEAYDVDRLINGKVWLPGTG VPFDADF*

Sequence Coordinates

DCARv2_Chr9:2365014..2367609-

Type

gene

Unique Name

DCAR_029160.gene

Sequence Residues

ATGGCTCAACAGACGGCCTTGATGGTGGTCAGTTCCTCACTCCGATTCGC
GGATTCATTAGTGTCGAGAGTCCAACACGATGGTACTGAAAAATCTGCGT
GGAGAACCTGCTTGTTTTTTTACAGTCAAGCGGCTTTTCGGCTCAATAGA
AGCTTAGATTCTTCCTTAGGAAGTACAGCTGATGATGTCCAGACATGGCT
GAGTGCTGCTGCATCGAATATACGTGCATGCCACGGTGGATTTTTCGATG
TTAACGTGACTAGTGATATCTTCCCTCTGGTAATGTTGAACAATGTTACA
GAATTGATAAGTAATTGTTTGGCTGTCAACTTCGGTTTTCTGCGACAAGA
AGGAATCAGACGTGAAGGCGTGATTAAGGTACCGTTTGGTATTGTTGTTG
TAGACAGCAACAAAACCTTTTTTTTACTTAAAATCATGTGAAAAACTGTT
CAAAATATAAAAGAAATTTTCTGAAAGGGAGCTTTTAGCTGAAAAGCTGC
TTTTAGGAAAAACACGTCTTCATGCTTTTGGAAAAGCTGCTTTTGAGTTT
TTGCCGGAAACTGTTATAGATTTCACTATCAAAACTCACCAAAAACATTA
TTTTTATATTATAACTCAAAATAAGCGAATATCAAAAAAATTACCAAACA
GGTATCTGATTTTTGCAACCGCACTTTTTCTTATCAGCACTTTTCTGAGA
ACACTATAATTTTTAACAGCAATCTCAGACAGACAAGGTTTTGAAAAAAG
ATGGGGCGCTTATGAAACGTGCAGATTGTGTAGTGGCTCAAGATGGCTCT
GGAAATTTCAGGACTATTAGGGAAGCTCTGCAGGCTGCAGGTCGAAGAAC
ACGCAGGATTTCGGACTTCGTTATTCGTGTGAAACAAGGTGTTTATTCAG
AAATCGTTGAGGTTCGACAAAGTAACATTGTGTTGATTGGTGATGGTGTA
GGCAAAACTGTTGTTACTGGGAACCGAAGGGTGGCGGATGGATTCACCCT
CTACGAGAGTGCAACTTTCAGTAAGTTGTTAAACCTCGATTAATTAATAA
TCCAACATAAATTAATATTTCAAATACATAAATTTTTTAACAATAACACT
ATACATAACTAGGCCAACATTCCAGGGAGGGACTCCTTATATGGAGTTAC
ATAGTGCGCCACTATAAATCATCAATTTTAATATAAATTCTGTTATAGAA
TACATATAAAACGTAATTCTAATATAAAATACTATAAAATAAATCTATTT
TAAGTAATTTAACACTTAAAATTTGATTAAAAAAAGTATATTTTCGAAAC
TGATTCTACAACAGAATAATTCTGGATGATTATTATTCTGTTATAGAATC
ATGTTGAGAAATTGCATAATTTTAGATGATCTTTGGAATAAAAAAATTAT
ATAACTTCGTTTTCGGTTTAATAATCAAAATTTGCAATTATATTTCATAA
AAATATAATAGAATATATATTATGTATATATTTATAATGGTGTGCTACGT
AACTCCATATAAGAGGGTATGCTATGGAGTGCTACCCAACATAACTAACC
TCGAGTAGTTAATACTCTCGATATATTAATACTAAAATATAGTATAAAAT
ATTATGATATTACTTCCTCTGTCCCTCTCTTTTTCTACAGTTTTTTTAAC
ATGCTTTTTAAGATGTATATAATGTGTAGGTTCACAATTTTTTAAAAAAA
ATTATAATTTTGTATAAAAATTTATACATTATTCATCTATTACAAAAAAA
TTAAAAATAATTTATCAAACGACCGTTTTAAAATACGTGTCCACCCCGTC
CCTTGAGAGGGATGGAGGAAATATTAATTAATAGAGATTTTATTGTAATT
TACAATACCAAGATTATGGTTTAACGGATAAATGTTATTGTTATTTTCAG
AGGTCTCCGGTGACGGATTTAAGGCCGTCGGAATGACATTCGAGAACACG
GCCGGTGTAGCAGCAGGCCAAGCGGTGGCAATGGCATCCACAGCTGACCG
TTCCGTCTTCTACCGCTGCTCTTTCAAAGGCTACCAAGACACACTCCTCG
CTCAATCCAATCGCCAATTCTACAAAAACTGCCAAATCTACGGCACAGTG
GACTTCATATTCGGCAACGCCGCTGCAGTCTTCCAGGACTGCACAATCCA
CCTCCGAAAGCCCCAACCAGGCGGCGGCCTCGTCGTCACGGCCCAAGACC
GAAACGGTCCGCACGAGAACACGGGCTTCACAATCCACCGAGGCAGAGTC
ATGGCAGCTCCAGATCTCGCACCATTTCCCCAAATCAAGGCCTTTTTGGG
GAGACCATGGGGGGACTTCTCACGCACAGTGTACCTGCGTTCGACACTCG
ACACTCTGGTTGACCCCGCGGGGTGGTTGGCGTGGGGAGGAGCGCCTCCG
AGAAGATGTGATACGTTAGATTACGGGGAGTTTGAGAATCATGGAACTGG
TGCATCGACTCATAGGAGAGTTAAATGGCGGGGTTATCGTGTTATACGTG
ATCGTCGGACCGCGGAAGCTTACGACGTTGATAGATTGATTAATGGTAAG
GTGTGGCTTCCAGGCACCGGAGTGCCGTTTGATGCAGATTTTTGA

Sequence Length

2595

Sequence MD5 Checksum

81b1ae23eccf6208f0c859fe5d28eeaf

Relationship

The mRNA DCAR_029160 is a part of Gene DCAR_029160
The Genetic Marker MK001191 BSSR-034 is adjacent to Gene DCAR_029160

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False