DCAR_023043 | CarrotOmics Tripal4

Cds

>DCAR_023043cds ATGGCTTGTAATTTTGCTGTCAGGGTGATTTATTATCCCAAAGAGATTCA TGGGGTTTCTGTGTTGAACACAAATAGGAGTAGAAAGAGTAGATTTAGTT GCAGGGTTATGAAGCTGTCCACTGGAGTGTCAGCTGTGGCAGCTAATCCT GTGAGGACATCAGAGGAGAGAGTGTACGAGGTGGTACTTAAACAAGCGGC TCTGGTCAGGGAAGAGAAGAGATCCAGCAGGGGTTTATGTTTGGATACCA AACGGACAGGATCTAAGTCATTTGATAAGTCTGAGAATGATGATGCTGGT ATGAAGAGCTGGAATTTGTTGAATGAGGCCTACGATCGGTGTGGCGAAGT TTGTGCTGAGTATGCCAAGACATTCTACTTGGGAACATTACTCATGACAC CAGAGCGCCGAAGAGCTGTTTGGGCAATCTATGTGTGGTGTAGAAGGACT GACGAGCTAGTAGACGGGCCTAATGCCTCCCATATCACGCCCAAGGCTCT TGACAGATGGGAGAAGAGGCTGAATGATCTTTTTGATGGCCAGCCGTATG ATATGTATGATGCTGCACTTGCTGACACGGTCTCCACATATCCTGTTGAT ATTCAGCCTTTCAAGGATATGATTGATGGAATGAGAATGGACTTGAAAAA GTCACGGTACCAGACTTTTGATGAGCTCTACCTCTACTGCTACTATGTTG CTGGAACAGTTGGACTGATGAGTGTTCCAGTTATGGGGATTGCCCCGGAA TCAAAGGCCACCACAGAGAGTGTTTACAGTGCAGCTTTAGCCCTCGGAAT TGCTAATCAGCTTACTAACATTCTCCGTGATGTTGGAGAAGATGCTAGGA GAGGGAGAATATATCTGCCTCAAGAGGAGCTTAAGCTCGCGGGAATAACA CCAGAATACATATTCAAAGGAAAGGTGACTGATAAGTGGCGTAGCTTCAT GAAAGGACAGATAAAAAGAGCAAGAATGTTCTTCGATGAAGCGGAGAAGG GTGTGGCAGAGTTAAGTTCAGCAAGTAGATGGCCAGTGTGGGCATCATTG TTATTGTACAAGCAAATTTTGGATGCCATTGAAGCCAATGACTATGATAA CTTCACCAAGAGAGCATATGTAGGCAAAGCTAAGAAACTAGTCTCTTTGC CTTTGGCTTATAGTAGAGCTCTTTTTGCCCCTTCTACTGTAAGATAG

Gene

PSY-1

Locus_tag

DCAR_023043

Name

DCAR_023043

Organism

Daucus carota subsp. sativus

Pep

>DCAR_023043pep MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANP VRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAG MKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRT DELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVD IQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPE SKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGIT PEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASL LLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR*

Sequence Coordinates

DCARv2_Chr6:2377863..2379676+

Type

gene

Unique Name

DCAR_023043.gene

Sequence Residues

ATGGCTTGTAATTTTGCTGTCAGGGTGATTTATTATCCCAAAGAGATTCA
TGGGGTTTCTGTGTTGAACACAAATAGGAGTAGAAAGAGTAGATTTAGTT
GCAGGGTTATGAAGCTGTCCACTGGAGTGTCAGCTGTGGCAGCTAATCCT
GTGAGGACATCAGAGGAGAGAGTGTACGAGGTGGTACTTAAACAAGCGGC
TCTGGTCAGGGAAGAGAAGAGATCCAGCAGGGGTTTATGTTTGGATACCA
AACGGACAGGATCTAAGTCATTTGATAAGTCTGAGAATGATGATGCTGGT
ATGAAGAGCTGGAATTTGTTGAATGAGGCCTACGATCGGTGTGGCGAAGT
TTGTGCTGAGTATGCCAAGACATTCTACTTGGGTATGTTGTCTCAAAACT
CCTCTCCTAGTTTTATTCTTAGGGATACAAGAACTAAGAACAAATTTTGT
TGAATGTACAGGAACATTACTCATGACACCAGAGCGCCGAAGAGCTGTTT
GGGCAATCTATGGTATGTTTTGAGAACAAATGAGCTGTTGTTTTTCTTTT
GCATTAACCTCTGTCTGTCTTTGATCAAGTGTGTTTATATTACAGTGTGG
TGTAGAAGGACTGACGAGCTAGTAGACGGGCCTAATGCCTCCCATATCAC
GCCCAAGGCTCTTGACAGATGGGAGAAGAGGCTGAATGATCTTTTTGATG
GCCAGCCGTATGATATGTATGATGCTGCACTTGCTGACACGGTCTCCACA
TATCCTGTTGATATTCAGGTAAGCTGCACTTCTTGAAAGGAGAATTAAAC
ACCCCGCCAGTGAAAATCAATGTAAACCAGATAGAGATATGTATATTGCT
TTTAGGACTCCAAGATGATTGTATACTGTTTTGTTGTGTTTCTCTAAAGC
TCGTGCATCAGCTATTTATCGAGGCTATTCACAACCTCCTTTCCATCCTT
TTAGTAACAGCCTCATCACGTAGCCACTTATCAACTTATTAGATAGTGCT
ATCTATTTGTTTTAACATAAACCTATTTTATAGGTACATTCAAAATATAC
ATGGCTAAGTCAAAGCCACAACTAACACTTCTTGCTAATGAATGCCATGG
GAGCCTTGTTTTCTAATTCTGTTCCTGCTGTGTTTTCAGCCTTTCAAGGA
TATGATTGATGGAATGAGAATGGACTTGAAAAAGTCACGGTACCAGACTT
TTGATGAGCTCTACCTCTACTGCTACTATGTTGCTGGAACAGTTGGACTG
ATGAGTGTTCCAGTTATGGGGATTGCCCCGGAATCAAAGGCCACCACAGA
GAGTGTTTACAGTGCAGCTTTAGCCCTCGGAATTGCTAATCAGCTTACTA
ACATTCTCCGTGATGTTGGAGAAGAGTAAGTCCATTTCTCACTCACAAAA
ACAAATCTTTTCCCAATACTTGAAATACAAAGAAACTAAATGATATTATT
CCTTGCAGTGCTAGGAGAGGGAGAATATATCTGCCTCAAGAGGAGCTTAA
GCTCGCGGGAATAACACCAGAATACATATTCAAAGGAAAGGTGACTGATA
AGTGGCGTAGCTTCATGAAAGGACAGATAAAAAGAGCAAGAATGTTCTTC
GATGAAGCGGAGAAGGGTGTGGCAGAGTTAAGTTCAGCAAGTAGATGGCC
AGTGTGGGCATCATTGTTATTGTACAAGCAAATTTTGGATGCCATTGAAG
CCAATGACTATGATAACTTCACCAAGAGAGCATATGTAGGCAAAGCTAAG
AAACTAGTCTCTTTGCCTTTGGCTTATAGTAGAGCTCTTTTTGCCCCTTC
TACTGTAAGATAG

Sequence Length

1813

Sequence MD5 Checksum

439bfb38542d861e1ba5436acc146ec5

Relationship

The mRNA DCAR_023043 is a part of Gene DCAR_023043
The Genetic Marker MK000033 PSY1 is adjacent to Gene DCAR_023043

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False