DCAR_019639 | CarrotOmics Tripal4

Cds

>DCAR_019639cds ATGGCATTAGATGCGGTCGAAAGTGCGATTATTTCGCGGGAATTGCAGCA CCCGCTGCCGAAAACAACAGACCCCGAAATTCAAATTGCGGGCAACTTTG CTCCCGTGCCTGAACAGCCTGTGAAGCAAAATCTTTCGGTTTCGGGAAAA ATCCCCGAATGTATAAACGGAGTGTACGTTCGCAACGGAGCCAATCCGCA CTTCGAGCCGAAAGCAGGGCACCATTTATTCGACGGGGATGGGATGGTTC ACGCGGTCCAGTTCAAGAACGGCTCAGCCAGCTACGCTTGCCGCTTCACC GAGACCGAAAGGCTTGTGCAGGAACGTAGCTTAGGAAGGCCTGCTTTCCC GAAAGCCATTGGTGAGCTCCATGGCCATTCCGGGATAGCGCGGCTCGCGC TTTTCTACGCTCGCGGCATGTTCGGACTTCTTGATCATAAGCATGGCATG GGGGTTGCGAATGCGGGGTTGGTTTATTTTAATGATCGGCTTCTAGCTAT GTCTGAAGATGATTTACCGTATCATGTTCGGGTTGGTCCATCAGGTGACC TTGAAACAATTGGAAGGTATAATTTTGATGGTCAGCTTGATTCGACTATG ATTGCTCACCCGAAAATCGACCCCGAAACTAGCGAACTTTTTGCTCTTAG TTATAATGTAATTCAGAAGCCGTACCTTAAATACTTTCGATTCTCTAGTG ACGGATCCAAGTCCGAAGACGTGGATATCCAGCTCTCTGATCCCACCATG ATGCATGATTTCGCGATCACGGAGAATTTCGTGGTGATTCCTGATCAACA GGTGGTTTTCAAAATGTCTGAGATGATTCAAGGCGGTTCCCCGGTTGTGT ATGACAAGAATAAAGTATCGCGTTTCGGGGTTTTGGATAAGTATGCTAGT GATGCTTCGGGGATCAAATGGGTTGAAGTTCCGGATTGTTTTTGTTTTCA TCTCTGGAATGCGTGGGAAGAAAAGGAGACTGATGAAGTTGTGGTGATCG GATCTTGCATGACTCCAGCCGACTCGATTTTTAACGAATGCGACGAAGGT TTACAAAGTGTTCTGTCCGAAATCAGGCTAAATTTGAAGACAGGGAAATC AATTAGAAGACCAATTCTGTCTTGCGATGATCAAGTGAACTTGGAAGCAG GGATGGTGAACAAAAATATGCTAGGCAGAAAGACGCAATTCGCGTACTTA GCGATCGCTGAGCCATGGCCTAAAGTTTCGGGTTTTGCGAAAGTGGACTT GTCTAGCGGCCAAGTGAACAAGTTCTTTTACGGGGATGAGAAATACGGAG GCGAGCCTCTATTTTTCCCGAACCCTGAATCGAAAAATGAAGACGATGGG TACATCTTGGCGTTTGTTCACGACGAGAAGAACTGGGAATCGGAACTTCA AATCGTTAATGCCGTGACTCTGGAGCTAGAGGCCTCGATTAAGCTTCCGT CCAGAGTGCCGTATGGTTTTCATGGGACATTCATTAGTGCGAAAGATTTG GAAACCCAGGCCTAG

Gene

NCED-1

Locus_tag

DCAR_019639

Name

DCAR_019639

Organism

Daucus carota subsp. sativus

Pep

>DCAR_019639pep MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGK IPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFT ETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGM GVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTM IAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTM MHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYAS DASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEG LQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYL AIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFPNPESKNEDDG YILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDL ETQA*

Sequence Coordinates

DCARv2_Chr5:40713880..40715395+

Type

gene

Unique Name

DCAR_019639.gene

Sequence Residues

ATGGCATTAGATGCGGTCGAAAGTGCGATTATTTCGCGGGAATTGCAGCA
CCCGCTGCCGAAAACAACAGACCCCGAAATTCAAATTGCGGGCAACTTTG
CTCCCGTGCCTGAACAGCCTGTGAAGCAAAATCTTTCGGTTTCGGGAAAA
ATCCCCGAATGTATAAACGGAGTGTACGTTCGCAACGGAGCCAATCCGCA
CTTCGAGCCGAAAGCAGGGCACCATTTATTCGACGGGGATGGGATGGTTC
ACGCGGTCCAGTTCAAGAACGGCTCAGCCAGCTACGCTTGCCGCTTCACC
GAGACCGAAAGGCTTGTGCAGGAACGTAGCTTAGGAAGGCCTGCTTTCCC
GAAAGCCATTGGTGAGCTCCATGGCCATTCCGGGATAGCGCGGCTCGCGC
TTTTCTACGCTCGCGGCATGTTCGGACTTCTTGATCATAAGCATGGCATG
GGGGTTGCGAATGCGGGGTTGGTTTATTTTAATGATCGGCTTCTAGCTAT
GTCTGAAGATGATTTACCGTATCATGTTCGGGTTGGTCCATCAGGTGACC
TTGAAACAATTGGAAGGTATAATTTTGATGGTCAGCTTGATTCGACTATG
ATTGCTCACCCGAAAATCGACCCCGAAACTAGCGAACTTTTTGCTCTTAG
TTATAATGTAATTCAGAAGCCGTACCTTAAATACTTTCGATTCTCTAGTG
ACGGATCCAAGTCCGAAGACGTGGATATCCAGCTCTCTGATCCCACCATG
ATGCATGATTTCGCGATCACGGAGAATTTCGTGGTGATTCCTGATCAACA
GGTGGTTTTCAAAATGTCTGAGATGATTCAAGGCGGTTCCCCGGTTGTGT
ATGACAAGAATAAAGTATCGCGTTTCGGGGTTTTGGATAAGTATGCTAGT
GATGCTTCGGGGATCAAATGGGTTGAAGTTCCGGATTGTTTTTGTTTTCA
TCTCTGGAATGCGTGGGAAGAAAAGGAGACTGATGAAGTTGTGGTGATCG
GATCTTGCATGACTCCAGCCGACTCGATTTTTAACGAATGCGACGAAGGT
TTACAAAGTGTTCTGTCCGAAATCAGGCTAAATTTGAAGACAGGGAAATC
AATTAGAAGACCAATTCTGTCTTGCGATGATCAAGTGAACTTGGAAGCAG
GGATGGTGAACAAAAATATGCTAGGCAGAAAGACGCAATTCGCGTACTTA
GCGATCGCTGAGCCATGGCCTAAAGTTTCGGGTTTTGCGAAAGTGGACTT
GTCTAGCGGCCAAGTGAACAAGTTCTTTTACGGGGATGAGAAATACGGAG
GCGAGCCTCTATTTTTCCCGAACCCTGAATCGAAAAATGAAGACGATGGG
TACATCTTGGCGTTTGTTCACGACGAGAAGAACTGGGAATCGGAACTTCA
AATCGTTAATGCCGTGACTCTGGAGCTAGAGGCCTCGATTAAGCTTCCGT
CCAGAGTGCCGTATGGTTTTCATGGGACATTCATTAGTGCGAAAGATTTG
GAAACCCAGGCCTAG

Sequence Length

1515

Sequence MD5 Checksum

00c15ff6edf97cd072e51df936349b27

Relationship

The mRNA DCAR_019639 is a part of Gene DCAR_019639
The Genetic Marker MK000048 NCED1 is located in Gene DCAR_019639
The Genetic Marker MK002864 K0308 is located in Gene DCAR_019639

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False