Nantaise transcriptome assembly Arias et al. 2020

Name
Nantaise transcriptome assembly Arias et al. 2020
Description

Plants of commercially acquired carrot (Daucus carota L.) cultivar Nantaise were harvested 8 weeks after sowing.

RNA was sequenced by OMIC Solution (Santiago, Chile) using the Ion Torrent PGM technology (chip P1.1.17) with IonXpress RNA kit (Thermo Fisher Scientific) after library profile analysis using an Agilent 2100 Bioanalyzer (Agilent Technologies, USA). Adapter sequences were removed, and a de novo transcriptome assembly was carried out following CLC Genomics Workbench default parameters including a quimera analysis.

The assembly contains 63,164 contigs, from which 18,488 genes are differentially expressed (DEG) between the two experimental conditions light and dark.

File
File Type
Nantaise transcriptome assembly Arias et al. 2020 FASTA file FASTA format
Software Name
CLC Genomics Workbench + quimera
Software Version
not specified
Data Source Name
Publication supplemental table S9
Data Source URI

https://link.springer.com/article/10.1007/s00438-020-01707-4

Project
Daucus carota subsp. sativus cultivar:Nantaise: Transcriptome from dark and light-grown carrot roots (Daucus carota subsp. sativus )
Relationship
The Analysis Nantaise transcriptome assembly Arias et al. 2020 blast to DCARv2 is a part of Analysis Nantaise transcriptome assembly Arias et al. 2020
Publication
Arias D, Maldonado J, Silva H, Stange C. A de novo transcriptome analysis revealed that photomorphogenic genes are required for carotenoid synthesis in the dark-grown carrot taproot.. Molecular genetics and genomics : MGG. 2020 Nov; 295(6):1379-1392.
Date and Time Executed
2020-07-12 05:00:00
Biological Sample
Organism
Daucus carota subsp. sativus
Data_source_file
438_2020_1707_MOESM1_ESM.xlsx