NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly

Full_ncbi_xml

3319248 3272198 GCF_001625215.1 GCF_001625215.1 1625215 ASM162521v1 79200 Daucus carota subsp. sativus (carrot) 4039 Daucus carota haploid haploid Chromosome 3 LNRQ01 PRJNA268187 268187 PRJNA326436 326436 SAMN03216637 3216637 cultivar DH1 186 false 3319238 Major Major 2016/05/25 00:00 2016/06/22 00:00 2016/05/06 00:00 2016/06/27 00:00 2016/05/06 00:00 2016/06/27 00:00 USDA ARS representative genome full-genome-representation genbank_has_annotation has-chloroplast has-chromosome has-mitochondrion has-plastid has_annotation has_egap_annotation latest latest_genbank latest_refseq refseq_has_annotation representative wgs GCA_001625215.1 GCF_001625215.1 different 56299 36610139 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/625/215/GCA_001625215.1_ASM162521v1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/215/GCF_001625215.1_ASM162521v1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/215/GCF_001625215.1_ASM162521v1/GCF_001625215.1_ASM162521v1_assembly_report.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/215/GCF_001625215.1_ASM162521v1/GCF_001625215.1_ASM162521v1_assembly_stats.txt 2C3X9999437000016252159898 0 9 21054 1987 56299 2 11 4826 11 0 4815 5 36610139 421539040 386806406 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/215/GCF_001625215.1_ASM162521v1/GCF_001625215.1_ASM162521v1_assembly_report.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/625/215/GCA_001625215.1_ASM162521v1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/215/GCF_001625215.1_ASM162521v1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/215/GCF_001625215.1_ASM162521v1/GCF_001625215.1_ASM162521v1_assembly_stats.txt 3 Chromosome representative genome USDA ARS ]]>

Name

Type

genome assembly

Description

This assembly represents the NCBI GenBank record for the Daucus carota DH1 Chromosome level assembly published in 2016. This is based on the same assembly as described in CarrotOmics record Carrot Genome Assembly DCARv2

Program, Pipeline, Workflow or Method Name

SOAPdenovo + GapCloser for SOAPdenovo + integration with linkage maps

Program Version

v. 2.04 + v. 1.12 + v. NOV-2013

Data Source Name

SAMN03216637

Relationship

The NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly is a part of Carrot Genome Assembly DCARv2

Database Reference Annotations

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Project

Biological Sample

SAMN03216637

Organism

Daucus carota

Germplasm

DH1