Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing
Name
Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing
Type
Project
Description
The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA268187). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.
Note that NCBI has substituted different organellar genomes in this assembly from different genotypes from earlier assemblies, this applies only to this RefSeq assembly.
Publication
- Ruhlman T, Lee SB, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H. Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.. BMC genomics. 2006 Aug 31; 7:222.
- Iorizzo M, Senalik D, Szklarczyk M, Grzebelus D, Spooner D, Simon P. De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome.. BMC plant biology. 2012 May 01; 12:61.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship
The Project Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing is a subproject of Project Carrot Genome Sequencing Project
Database Reference Annotations
Biological Sample