DCAR_017563 | CarrotOmics Tripal4

Cds

>DCAR_017563cds ATGGCCACTTATGCTACTTGGGCTAAACCAAAAATTCTAACTTCTTGTCC ACAAAGAGAAGTGAAATCACAAAAGGCCTACAGAAAAAACAATGTGAATT GTAGTTTGCAGTCTCCTTCTATACTTCATTTCCCCAAACAATCACCCCAT ATATATCAAACACCTTGTGTTCCAACCACCATTGCCCAGCCAAAACATCA AGATTCTTCGTCGAGTAATCAATGGAATTTCCTACAAAAAGCAGCTTCAA TGGCCTTAGATGCCGTTGAAAATGTGATTGCTGCGCGAGAAAAAGAACAC CCTCTGCCAAAAACAGCTGACCCTCAAGTCCAAATTGCCGGAAACTTCGC TCCTGTCCCAGAACAGCCTGTTCGCCACCGCCTCCCAGTCACCGGAAAGA TACCTGAATGTATTTCCGGAGTCTATGTTCGAAACGGGGCCAACCCCCAT TTGGAACCCACTGCAGGGCATCATTTTTTCGACGGAGATGGGATGGTTCA TGCTGTCCAATTCAAAGAGGGGGCTGCTAGCTACGCTTGCAGGTTCACTG AAACAGAAAGACTCATCCAGGAGCGTAATTTGGGGAAGCCTGTTTTCCCC AAAGCCATTGGCGAGCTTCATGGCCACTCAGGGATTGCTAGGCTTGCTTT GTTTTACGCTCGCGGCTTGTTTGGCCTTGTTGATCATTCTCAGGGCACTG GCGTGGCCAACGCGGGCTTGGTTTATTTTAATAACCGATTGTTAGCTATG TCTGAAGATGACTTGCCTTATCATGTGGAGATCACTTCTTCGGGTGATCT TAAGACTGTTGGGAGGTACAATTTTGATGGCCAGTTGGATACCACGATGA TTGCTCACCCCAAAATTGATCCGGATACTAAGGAGCTCATTGCTTTGAGT TATAATGTGATTCAGAAACCTTATTTGAAGTACTTTCGGGTTTCACCTGA TGGAGTCAAGTCGGATGATGTTGATATTGAATTGGCTGACCCGACTATGA TGCATGATTTTGCAATTACGGAGAATTTTGTGGTGATTCCTGACCAGCAA GTGGTGTTCAAGATTTCGGAAATGATAAAAGGTGGATCACCAGTGGTGTA TGACAAGAATAAAGTGTCGCGTTTTGGTGTTTTGGACAAGTATGCGAAAG ATGGGGAGGGAATTAAGTGGGTTGAGGTTCCGGATTGTTTCTGTTTTCAT TTGTGGAATGCTTGGGAAGATGAAGAAAGTGATGAAATTGTGGTGATTGG CTCTTGTATGACTCCAGCTGATTCTATTTTTAATGAATGTGATGAAGGAT TACAGAGTGTTCTGTCTGAAATTAGGCTCAATTTGAAGACAGGAAAATCA ACACGAAAGCCAATTATGTCATCGGAGGATCAAGTGAATCTGGAGGCAGG GATGGTGAACAAAAACAAGCTGGGAAGAAAAACCCAGTTTGCTTATTTGG CCATTGCTGAGCCTTGGCCTAAAGTTTCTGGTTTTGCGAAAGTTGATCTC TTCACTGGTCAAGTCCAGAAGTTCTTTTACGGGGATCATAAGTATGGAGG TGAGCCTCTTTTTCTCCCAAAAAACCCGAATTCTGAGAATGAAGATGATG GCTATATATTAGCATTTGTTCACGACGAGAAGGCATGGAAGTCGGAGCTT CAGATCGTTAATGCCATGACTCTAGAGTTAGAGGCCACGGTCCAGCTTCC GTCCAGGGTGCCATATGGATTCCATGGCACATTCATTAGTGCAAAAGATT TAGAAAGTCAGGCCTGA

Gene

NCED-2

Locus_tag

DCAR_017563

Name

DCAR_017563

Organism

Daucus carota subsp. sativus

Pep

>DCAR_017563pep MATYATWAKPKILTSCPQREVKSQKAYRKNNVNCSLQSPSILHFPKQSPH IYQTPCVPTTIAQPKHQDSSSSNQWNFLQKAASMALDAVENVIAAREKEH PLPKTADPQVQIAGNFAPVPEQPVRHRLPVTGKIPECISGVYVRNGANPH LEPTAGHHFFDGDGMVHAVQFKEGAASYACRFTETERLIQERNLGKPVFP KAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAM SEDDLPYHVEITSSGDLKTVGRYNFDGQLDTTMIAHPKIDPDTKELIALS YNVIQKPYLKYFRVSPDGVKSDDVDIELADPTMMHDFAITENFVVIPDQQ VVFKISEMIKGGSPVVYDKNKVSRFGVLDKYAKDGEGIKWVEVPDCFCFH LWNAWEDEESDEIVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKS TRKPIMSSEDQVNLEAGMVNKNKLGRKTQFAYLAIAEPWPKVSGFAKVDL FTGQVQKFFYGDHKYGGEPLFLPKNPNSENEDDGYILAFVHDEKAWKSEL QIVNAMTLELEATVQLPSRVPYGFHGTFISAKDLESQA*

Sequence Coordinates

DCARv2_Chr5:20938261..20940614+

Type

gene

Unique Name

DCAR_017563.gene

Sequence Residues

AAAGAGAAGAGTGAAGTGGAAGGCAATCGTGTCAAAGTTTGAAGCAGCTA
TGTTTTCTCCACCTCTTTTATTGCTTCTCCTTTTTTATACTTCTCTTTTT
CATCAATCTCCACGTGGTCTTCTCTTACATGTTTCTACTTGCCCTCTCCC
TCACTATATATACCCTTCTTCCTCACTCTCCCTTGTATCATCACTCCACC
TACAATAACACCACTCTAGTCTCTCTTATTCTCTCTGTCTTTTCACACTC
AAAACATAAACACACACACATACCATGGCCACTTATGCTACTTGGGCTAA
ACCAAAAATTCTAACTTCTTGTCCACAAAGAGAAGTGAAATCACAAAAGG
CCTACAGAAAAAACAATGTGAATTGTAGTTTGCAGTCTCCTTCTATACTT
CATTTCCCCAAACAATCACCCCATATATATCAAACACCTTGTGTTCCAAC
CACCATTGCCCAGCCAAAACATCAAGATTCTTCGTCGAGTAATCAATGGA
ATTTCCTACAAAAAGCAGCTTCAATGGCCTTAGATGCCGTTGAAAATGTG
ATTGCTGCGCGAGAAAAAGAACACCCTCTGCCAAAAACAGCTGACCCTCA
AGTCCAAATTGCCGGAAACTTCGCTCCTGTCCCAGAACAGCCTGTTCGCC
ACCGCCTCCCAGTCACCGGAAAGATACCTGAATGTATTTCCGGAGTCTAT
GTTCGAAACGGGGCCAACCCCCATTTGGAACCCACTGCAGGGCATCATTT
TTTCGACGGAGATGGGATGGTTCATGCTGTCCAATTCAAAGAGGGGGCTG
CTAGCTACGCTTGCAGGTTCACTGAAACAGAAAGACTCATCCAGGAGCGT
AATTTGGGGAAGCCTGTTTTCCCCAAAGCCATTGGCGAGCTTCATGGCCA
CTCAGGGATTGCTAGGCTTGCTTTGTTTTACGCTCGCGGCTTGTTTGGCC
TTGTTGATCATTCTCAGGGCACTGGCGTGGCCAACGCGGGCTTGGTTTAT
TTTAATAACCGATTGTTAGCTATGTCTGAAGATGACTTGCCTTATCATGT
GGAGATCACTTCTTCGGGTGATCTTAAGACTGTTGGGAGGTACAATTTTG
ATGGCCAGTTGGATACCACGATGATTGCTCACCCCAAAATTGATCCGGAT
ACTAAGGAGCTCATTGCTTTGAGTTATAATGTGATTCAGAAACCTTATTT
GAAGTACTTTCGGGTTTCACCTGATGGAGTCAAGTCGGATGATGTTGATA
TTGAATTGGCTGACCCGACTATGATGCATGATTTTGCAATTACGGAGAAT
TTTGTGGTGATTCCTGACCAGCAAGTGGTGTTCAAGATTTCGGAAATGAT
AAAAGGTGGATCACCAGTGGTGTATGACAAGAATAAAGTGTCGCGTTTTG
GTGTTTTGGACAAGTATGCGAAAGATGGGGAGGGAATTAAGTGGGTTGAG
GTTCCGGATTGTTTCTGTTTTCATTTGTGGAATGCTTGGGAAGATGAAGA
AAGTGATGAAATTGTGGTGATTGGCTCTTGTATGACTCCAGCTGATTCTA
TTTTTAATGAATGTGATGAAGGATTACAGAGTGTTCTGTCTGAAATTAGG
CTCAATTTGAAGACAGGAAAATCAACACGAAAGCCAATTATGTCATCGGA
GGATCAAGTGAATCTGGAGGCAGGGATGGTGAACAAAAACAAGCTGGGAA
GAAAAACCCAGTTTGCTTATTTGGCCATTGCTGAGCCTTGGCCTAAAGTT
TCTGGTTTTGCGAAAGTTGATCTCTTCACTGGTCAAGTCCAGAAGTTCTT
TTACGGGGATCATAAGTATGGAGGTGAGCCTCTTTTTCTCCCAAAAAACC
CGAATTCTGAGAATGAAGATGATGGCTATATATTAGCATTTGTTCACGAC
GAGAAGGCATGGAAGTCGGAGCTTCAGATCGTTAATGCCATGACTCTAGA
GTTAGAGGCCACGGTCCAGCTTCCGTCCAGGGTGCCATATGGATTCCATG
GCACATTCATTAGTGCAAAAGATTTAGAAAGTCAGGCCTGATACTCAATT
TGGCCTGATCAATAGTTTGCTAGTTTGATTGTTATTGCAGCCGAGAATTA
TCAGAGGGATTGATCATACGTCCCCGAAATTCCCCGAGCTGTTTAAACTA
CGGACCTTTTGTTGGTTGTCACAAAAGAGTTCGGATAGTATCATTTATCT
TGTTTATATGTAATGATTTCATGGGAAGATTTGAAGAACCAGCTTGAAGC
TTTGGTGTAGGTAGAATTTGAGCTCAGCTGGTTTCTTGCATATTCTATCC
CATTTGGTTGTACATAAGCGAGTGCTATAGCCTATATGAATTACCAGTTT
CAC

Sequence Length

2353

Sequence MD5 Checksum

5dc04a1bb23a83f10a95671e4617559b

Relationship

The mRNA DCAR_017563 is a part of Gene DCAR_017563
The Genetic Marker MK000049 NCED2 is located in Gene DCAR_017563

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False