DCAR_017117 | CarrotOmics Tripal4

Cds

>DCAR_017117cds ATGGACTCTTCCTCCTCAATCAACCGAAGTACGACGACGACGACGACAAC TACAAGCAGCAGCAAGAGCAGCAGTAGCAGCGGCAGTGAGCTCTTCATCT GCTTCAACACTCGTCGTCGTCTCACAACAAGAATCTCGGCGAGACCTTCC ATTCTAAGCCCTGCCCGTGACCCCCACATCTCGCTCTCCACTTGCCGCAG TATCAGCAGCAGCCGCAGGCTCCGAAGCAGCGGCAGCACCGCCAGGAACC GCGGCCGTTCCTCTCCCCTGTTCGCGGGTGCGGCCAAGAAGAGAGGCTCC GGGTTCGACAACCCGGAGCCCTCTTCTCCGAAGGTGACTTGCATTGGCCA GGTTCGCGTGAAGCCGAAGAAGAAAGGGATCAAGATTAGAAGTTTACCTA GAAGGCAGAGCGGGGAAGTGAGTTTCAGAACATTGGATCAGATTCAGAGG CAGAGTAGTTATAACAATGCTTTGTTTCAGAATCCGAGGAACCAGAGATG GGTGCATTTGCCGTCGTTTGATTGTTTGATTCCTTGTAAATCAGCCTGTG TTTGTGAAAATGATAAGGGGGATGGGAAGGAAGTGGTGAATCAGGTGGTG GTTGTCCAAGAAAATGCGAAAAAGGAACAAGATCAATTGCCTTTGAGGAG TGCAAGGAGGCATGTTTTCGATAGAATTGAGATTAAAGATGAGGGTCTAA AGGATATGGAGGAGAAGAATTTGAGTATTCCGCCTAAGAATGCGCTTTTG CTGATGAGGTCTAGGTCGGATCCTGTGAAGATGGATGAGGAGAAGAATGT GAGTGTTCCGCCTAAGAATGCGCTTTTGTTGATGAGGTGCAGATCGGATC CTGTGAAGATGGAGGCTCTTGTTAATAGATGTTGGGAGCCTCAGTTACCG AAACAGGTAGAGGAAGATGATGATGAAGAAGTGGTTGAGGACAGTGATGA AAATATTCTTGTGGATGTGAAAAATGTTGAAATTGAAGATGAGAAAGTGA GCGAAGAAGAGGAAACAGAGGGCGTGAAAAGATTAGTAGTAGATGAAGAG AGTGAGGAAGAAGATGATGAAGGAATCGAAGCAACGAGAGATAAGAATGA AGATGAGAGTAGAGTAAGTTATAGTAATGCCTCATTTTCTCTACAGTCAG ATGATGATTTGAGTGAACCAGATGATGATGATGATGAAGAGATAGCTACA CTATACGAAGAAGAAACATCGAGCCATGTCAAGATTTTGGAAGAGAAAAC AGAGGAGCTGGAAAGGGAGAATGAAGCAAAAACAATGGTAAAGAGAGAAA GTGAGGAGGTGGTAAAGAAAGAAGAGACAAGAGGCTCAAAGCTTCCTGAT TGTTTGTTGTTAATGATGTGTGAGCCTAAATTATCAATGGAGGTTTCGAA GGAGACATGGGTTTGTGACAGAGGCTTTGTTGAGGAAAAAGGTAAGGTGG ATAAGGTGAGTGTGGAATGCAATGCTAAACAGCATTGGCCACTCACAAAA CCTTCGTGTACTTTTCCGGCTTCTATGGCTGCGATGATAGAGCACAAATT ACTGAATGCAGCAGCGTACGAGCCGTTTGTGCTGACAAGATGCAAGTCTG CGCCAATCAGGACGGCTGGTGCCATTCAGCTGGTTCCGGATGGGTGGTTT TGGAAGAATGAGGGGCTTCAGAAGCATCGCCGTGGTGGATTTGGGGCAGC TGAGCTGGTGGCCTTTCAGCTGAGCCGGTAA

Locus_tag

DCAR_017117

Name

DCAR_017117

Organism

Daucus carota subsp. sativus

Pep

>DCAR_017117pep MDSSSSINRSTTTTTTTTSSSKSSSSSGSELFICFNTRRRLTTRISARPS ILSPARDPHISLSTCRSISSSRRLRSSGSTARNRGRSSPLFAGAAKKRGS GFDNPEPSSPKVTCIGQVRVKPKKKGIKIRSLPRRQSGEVSFRTLDQIQR QSSYNNALFQNPRNQRWVHLPSFDCLIPCKSACVCENDKGDGKEVVNQVV VVQENAKKEQDQLPLRSARRHVFDRIEIKDEGLKDMEEKNLSIPPKNALL LMRSRSDPVKMDEEKNVSVPPKNALLLMRCRSDPVKMEALVNRCWEPQLP KQVEEDDDEEVVEDSDENILVDVKNVEIEDEKVSEEEETEGVKRLVVDEE SEEEDDEGIEATRDKNEDESRVSYSNASFSLQSDDDLSEPDDDDDEEIAT LYEEETSSHVKILEEKTEELERENEAKTMVKRESEEVVKKEETRGSKLPD CLLLMMCEPKLSMEVSKETWVCDRGFVEEKGKVDKVSVECNAKQHWPLTK PSCTFPASMAAMIEHKLLNAAAYEPFVLTRCKSAPIRTAGAIQLVPDGWF WKNEGLQKHRRGGFGAAELVAFQLSR*

Sequence Coordinates

DCARv2_Chr5:11731919..11734330+

Type

gene

Unique Name

DCAR_017117.gene

Sequence Residues

CATGGATAATTTTTATGATTTTCACTTAAAAGAAATACTTATACGAAGGG
TATAATGGTCAAAAAGTGTACTAATAGTTTCCCATTCACTTGATATATGC
CTTCTCATATCAAACCTACTGCACTCCTTGCAAATTTCATCTCCTCTCTT
CACTTCCACACACGAGCTTATGAAGAAGTAGCAAACCATATACATACCTC
AAAATGGACTCTTCCTCCTCAATCAACCGAAGTACGACGACGACGACGAC
AACTACAAGCAGCAGCAAGAGCAGCAGTAGCAGCGGCAGTGAGCTCTTCA
TCTGCTTCAACACTCGTCGTCGTCTCACAACAAGAATCTCGGCGAGACCT
TCCATTCTAAGCCCTGCCCGTGACCCCCACATCTCGCTCTCCACTTGCCG
CAGTATCAGCAGCAGCCGCAGGCTCCGAAGCAGCGGCAGCACCGCCAGGA
ACCGCGGCCGTTCCTCTCCCCTGTTCGCGGGTGCGGCCAAGAAGAGAGGC
TCCGGGTTCGACAACCCGGAGCCCTCTTCTCCGAAGGTGACTTGCATTGG
CCAGGTTCGCGTGAAGCCGAAGAAGAAAGGGATCAAGATTAGAAGTTTAC
CTAGAAGGCAGAGCGGGGAAGTGAGTTTCAGAACATTGGATCAGATTCAG
AGGCAGAGTAGTTATAACAATGCTTTGTTTCAGAATCCGAGGAACCAGAG
ATGGGTGCATTTGCCGTCGTTTGATTGTTTGATTCCTTGTAAATCAGCCT
GTGTTTGTGAAAATGATAAGGGGGATGGGAAGGAAGTGGTGAATCAGGTG
GTGGTTGTCCAAGAAAATGCGAAAAAGGAACAAGATCAATTGCCTTTGAG
GAGTGCAAGGAGGCATGTTTTCGATAGAATTGAGATTAAAGATGAGGGTC
TAAAGGATATGGAGGAGAAGAATTTGAGTATTCCGCCTAAGAATGCGCTT
TTGCTGATGAGGTCTAGGTCGGATCCTGTGAAGATGGATGAGGAGAAGAA
TGTGAGTGTTCCGCCTAAGAATGCGCTTTTGTTGATGAGGTGCAGATCGG
ATCCTGTGAAGATGGAGGCTCTTGTTAATAGATGTTGGGAGCCTCAGTTA
CCGAAACAGGTAGAGGAAGATGATGATGAAGAAGTGGTTGAGGACAGTGA
TGAAAATATTCTTGTGGATGTGAAAAATGTTGAAATTGAAGATGAGAAAG
TGAGCGAAGAAGAGGAAACAGAGGGCGTGAAAAGATTAGTAGTAGATGAA
GAGAGTGAGGAAGAAGATGATGAAGGAATCGAAGCAACGAGAGATAAGAA
TGAAGATGAGAGTAGAGTAAGTTATAGTAATGCCTCATTTTCTCTACAGT
CAGATGATGATTTGAGTGAACCAGATGATGATGATGATGAAGAGATAGCT
ACACTATACGAAGAAGAAACATCGAGCCATGTCAAGATTTTGGAAGAGAA
AACAGAGGAGCTGGAAAGGGAGAATGAAGCAAAAACAATGGTAAAGAGAG
AAAGTGAGGAGGTGGTAAAGAAAGAAGAGACAAGAGGCTCAAAGCTTCCT
GATTGTTTGTTGTTAATGATGTGTGAGCCTAAATTATCAATGGAGGTTTC
GAAGGAGACATGGGTTTGTGACAGAGGCTTTGTTGAGGAAAAAGGTAAGG
TGGATAAGGTGAGTGTGGAATGCAATGCTAAACAGCATTGGCCACTCACA
AAACCTTCGTGTACTTTTCCGGCTTCTATGGCTGCGATGATAGAGCACAA
ATTACTGAATGCAGCAGCGTACGAGCCGTTTGTGCTGACAAGATGCAAGT
CTGCGCCAATCAGGACGGCTGGTGCCATTCAGCTGGTTCCGGATGGGTGG
TTTTGGAAGAATGAGGGGCTTCAGAAGCATCGCCGTGGTGGATTTGGGGC
AGCTGAGCTGGTGGCCTTTCAGCTGAGCCGGTAAAAAGTAAAATTTGGAA
TTTACAGGCGATATTACTGCTGTTATTTGGGCTGTTTAGTGTGTTTTGGA
TGCTTCGTTTTACTAGTAAATCTTCATATGTAATACTACTACTAATCCAT
GTATTGATTTCGTTCAACTCAGGAACAAGGTTTGGAATAAGTCTTGTTGT
ATTTCATTTTTCATCCGATGTTTGTATTTCATTTTTCATCCGATGTTTGT
AATTAGTCGTCGTAGAGTTGCTGGTTTTGCTGGTAATGTAAGTGATTCAC
TCAGGCAATAAGCATCGATCATGATATTTACGTTTTTATGGAGCTGTGAT
TTGGTTTTCTCAGAAGTACTTGACCCTATCAACTTGTGTTGTTTTGGTAA
AAGAAGATGTTCAAATTAAGAAAAAGTTCCAAATATGGAGGAAGTTGGGG
AAAACTATCAGAGACCGCAGTGTGTGGATGATAGCAAGAAAAACTATTTA
CAGAAACAAAA

Sequence Length

2411

Sequence MD5 Checksum

3f608950fdc140dfb8a3494b6f5c2b71

Relationship

The mRNA DCAR_017117 is a part of Gene DCAR_017117
The Genetic Marker MK002116 ESSR-011 is located in Gene DCAR_017117
The Genetic Marker MK002675 K0119 is located in Gene DCAR_017117

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False