DCAR_001978 | CarrotOmics Tripal4

Cds

>DCAR_001978cds ATGGCACCTCTTCACTTCATTTCTTCAAAAACACCCTCTTTCACACTCTC CTTGTTTTTCTTGTTCTTCTTCTTCACTTTGTGTTGGAGTAGCCGTGTGC CCAGAGGGACTGGGCTTTCTAGGCAGAAGCTTGAGGTTCAGAAGCACTTA AATCGACTCAACAAGCCCCCCATCAAATCCATTCAGAGCCCAGATGGGGA TACCATTGACTGTATTCCAATCTCACATCAGCCTGCTTTTGATCACCCTT TCCTTAAAGATCACAAAATCCAGCATGCCATAGCTTATGTTGAAGGGGAC AAGTATTATGGTGCAAGAGCAACTATAAATGTTTGGGAGCCAAAAATACA GCAGGCTAATGAGTTTAGTTTGTCACAAATTTGGGTTCTTGGTGGTTCTT TTGGTGAAGATCTTAATAGCATTGAAGCTGGTTGGCAGGTCAGCCCAGAT CTTTATGGTGATAATAACACAAGGCTTTTCACTTATTGGACTAGCGATGC ATATCAAGCAACAGGGTGCTACAACTTACTCTGCTCAGGCTTCATACAAA TCAACAGCGAAATAGCAATGGGTGCAAGCATCTCCCCGGTGTCTGCTGTT CGAAATTCTCAATATGATATCAGTATTCTTGTTTGGAAGGATCCAAAAGA AGGAAATTGGTGGATGCAGTTCGGCAATGGATATGTACTAGGATACTGGC CTTCTTTCCTCTTCTCATACTTAGCCGAGAGTGCCTCAATGATAGAATGG GGCGGTGAGGTTGTCAACTCCGAGGCCGACGGTCACCATACCTCAACCCA AATGGGCAGCGGAAGATTTCCAGAAGAAGGGTTCGGAAAGGCCAGCTACT TCAGGAACATCCAAGTCGTCGATAGTTCCAACAATCTGAAGGCTCCTAAA AACATCGGCACATTTACGGAACAGTCCAACTGCTATGATGTTCAAACAGG CAGCAATGAGGACTGGGGTAGATACTTTTACTATGGAGGGCCTGGTAAAA ACCCAAACTGCCCATGA

Locus_tag

DCAR_001978

Name

DCAR_001978

Organism

Daucus carota subsp. sativus

Pep

>DCAR_001978pep MAPLHFISSKTPSFTLSLFFLFFFFTLCWSSRVPRGTGLSRQKLEVQKHL NRLNKPPIKSIQSPDGDTIDCIPISHQPAFDHPFLKDHKIQHAIAYVEGD KYYGARATINVWEPKIQQANEFSLSQIWVLGGSFGEDLNSIEAGWQVSPD LYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSAV RNSQYDISILVWKDPKEGNWWMQFGNGYVLGYWPSFLFSYLAESASMIEW GGEVVNSEADGHHTSTQMGSGRFPEEGFGKASYFRNIQVVDSSNNLKAPK NIGTFTEQSNCYDVQTGSNEDWGRYFYYGGPGKNPNCP*

Sequence Coordinates

DCARv2_Chr1:23168295..23170496-

Type

gene

Unique Name

DCAR_001978.gene

Sequence Residues

ATGGCACCTCTTCACTTCATTTCTTCAAAAACACCCTCTTTCACACTCTC
CTTGTTTTTCTTGTTCTTCTTCTTCACTTTGTGTTGGAGTAGCCGTGTGC
CCAGAGGGACTGGGCTTTCTAGGCAGAAGCTTGAGGTTCAGAAGCACTTA
AATCGACTCAACAAGCCCCCCATCAAATCCATTCAGGTACATATCTTTAC
ATCTACTCACATTTTTATGTATGTATTGAGCCTTATTGGTACTTTTGTTT
GTTATTTATGTTATATTGAGCATTTGTGTTGTGTTTTGAAATTTTGTGTA
TGGAAAAGAATAGTTCTTAATTATTGTTGTTTTGAATGAGCAGAGCCCAG
ATGGGGATACCATTGACTGTATTCCAATCTCACATCAGCCTGCTTTTGAT
CACCCTTTCCTTAAAGATCACAAAATCCAGGTACCCTTTTTTATTTTTGA
GAAAATGAGCAAGAAATGAGGCTTAAAGTTGATGTTTTGTGTTTTTGTGC
TTTGAATTCTCAGATGAGGCCTAGCTATCACCCAGAAGGGTTGTTTGATG
AGAGCAAGATGTCAACAGAATCTAGCGAAAAGGCGAAGCCCATGTCTCAG
CTTTGGCACATGAATGGTAGATGCCCAGCAGATACTATACCTGTGAGAAG
AACAAAGAAAGATGACATTTTGAGAGCAAGCTCAGTTAAAAGATATGGTA
AAAAGAAGCATAGAAGCATTCCTAAGCCCAGGTCTGCAGATCCTGACCTT
GTTAACGAAAGCGGTCATCAGGTAGCTTTGATTACAAGCTTTTTTGCACT
CTTATAAGCAGTATGTATACATGGTTTCTAATTGAATTCATTGTATTGTG
ATTTTAATTTTCTAGCATGCCATAGCTTATGTTGAAGGGGACAAGTATTA
TGGTGCAAGAGCAACTATAAATGTTTGGGAGCCAAAAATACAGCAGGCTA
ATGAGTTTAGTTTGTCACAAATTTGGGTTCTTGGTGGTTCTTTTGGTGAA
GATCTTAATAGCATTGAAGCTGGTTGGCAGGTAAACTTTATATTTTGGTT
TTGTTTATGGAGAAATTGCAGAACAGCTTGATTATGGCATTCACATGGCT
CTTTTTAAGGTATTTCTATTATTAGGTCTGACTGTGGCATGTTCTTGATA
ACAGGTCAGCCCAGATCTTTATGGTGATAATAACACAAGGCTTTTCACTT
ATTGGACTGTAAGTCCATAATTTATCATACAATTCGTTCCTTTACTCACT
TCAACTGGATTTCACAAGAATACTCAGAGTTTTTCTTGATGCAGAGCGAT
GCATATCAAGCAACAGGGTGCTACAACTTACTCTGCTCAGGCTTCATACA
AATCAACAGCGAAATAGCAATGGGTGCAAGCATCTCCCCGGTGTCTGCTG
TTCGAAATTCTCAATATGATATCAGTATTCTTGTTTGGAAGGTGAAATTG
AAACCTTACCTGGCCATATTCTTAAAGTTTGAACTTTTGCAACTGACTTT
TGATTGTTAAAATTAATTTTTTTCAACAAAAGGCTCCATGATAGTGAAAT
CAACACACAAGTATACAGCTTAATGATTAATTAGTTTGTTTATTTGAGTA
TAGATTGTGGAATCATATTCCCATAACTTGAGGTTGTGGAATCATATTCT
ATAGACTCTAGAGTAATTATTTTTGAGCGGTCTTAATTTGATCATTGCTC
CGTGCTTAGTTTAATAAGAAACCTTTCTTTTAAAGTTAATTGTTGATTAT
GGTGTACGCATCTTCATCCAAAGCTTCTTCTTGGTTAGTTCTCAAGAATC
ATATGTATTTCATCCATGTGTAGGATCCAAAAGAAGGAAATTGGTGGATG
CAGTTCGGCAATGGATATGTACTAGGATACTGGCCTTCTTTCCTCTTCTC
ATACTTAGCCGAGAGTGCCTCAATGATAGAATGGGGCGGTGAGGTTGTCA
ACTCCGAGGCCGACGGTCACCATACCTCAACCCAAATGGGCAGCGGAAGA
TTTCCAGAAGAAGGGTTCGGAAAGGCCAGCTACTTCAGGAACATCCAAGT
CGTCGATAGTTCCAACAATCTGAAGGCTCCTAAAAACATCGGCACATTTA
CGGAACAGTCCAACTGCTATGATGTTCAAACAGGCAGCAATGAGGACTGG
GGTAGATACTTTTACTATGGAGGGCCTGGTAAAAACCCAAACTGCCCATG
A

Sequence Length

2201

Sequence MD5 Checksum

3402c7db3be433e66df5d90e251aeab5

Relationship

The mRNA DCAR_001978 is a part of Gene DCAR_001978
The Genetic Marker MK016699 SSR0158 is adjacent to Gene DCAR_001978

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False