XM_017379333.1 | CarrotOmics Tripal4

Gbkey

mRNA

Gene

LOC108208800

Model_evidence

Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns

Name

XM_017379333.1

Organism

Daucus carota subsp. sativus

Product

protein SCAR3-like, transcript variant X1

Transcript_id

XM_017379333.1

Type

mRNA

Unique Name

XM_017379333.1

Sequence Residues

GTCACTTCTGTCTGCCTTTAAATGTCTTGCTATGTATACCTATAGTTACG
TACATAATTGTATCTCTATATAGCAGTTCAGCTGCTCCAATCTCCTCACC
TACTTCTCCGTATTAACTTTACAGTTTCTGGAGAGGGACTGTGATTGAAT
CTAGAGAGAGAAAGTGGGTGGCTCTAGAAAGAAAAAATGATTGATTCTAG
AGAGGGAAAGTAGGTGATTCGAGGGGGGGGGGGGGAGAGAGAGAGAGGGA
GAGAGGGGGAGAGAGAGAGAGATGCCACTAGTGAGAGTTGAGGTGAGGAA
TGAGTACACGTTAGGAATGAGGGAGGTGTATAAAGATGAAGATGACCCGA
AAGCACTGTTAGAGGGAGTAGTTGTTGCTGGACTTGTTGGCGTTTTACGA
CAATTAGGCGATCTCGCTGAATTCGCAGCAGATGTGTTTCATGGATTACA
AGAACAAGTGACGAATACATCATCCAGAAGTAATCAGTTAAAGATTCGTG
CACGAAAAATTGAAGCTGCAGTTTCTCCTCTTGAAAAATCTATATTATCT
CAGAGAAGCCACTTACACTTTGCTTACACAACTGGTTCCCACTGGCATGC
ACATATTCAAAGTGAACGAAATCACTTCATATATAGTGACTTGCCAATTT
TTGTTATGGATTTATACGGAAAATGTCGTAGACCTCCACACCTGCATTTG
CTAGACAAGTTTGACACTGGTGGCCCAGGATCTTGCCTAAAGAAATTTTC
AGATCCAGCCTTTTTTAGGAGAGAATCGGCTGGTTTTGATGGAGCATATG
CTGAAAATTTTTCAAGGCATAAGAAGGCTCGTAAAAGAAAGAAGAAGAAG
AGAACATGGGTTCCGGACGACGACGAACCGCAGAGTGTTAATCATGGCAC
ACCAACATCCAGTCACAGCGGCAGATTGCATTACGCTTCTCAGAACTTTC
ATTCTCCGTCTCAGACCGTCTCGACATATGATGCTGCAAAACAATTTGAA
ATAGAAACTCATTTAATCCCTTCATATTCAAGAAATGCAGAACCTGAAGA
GTATGTTTTTAATCCAAGTAACACTTCAAAGTTTGACGGATGTGAACCTG
AGGAAATCTCTTCTCGGTGGATGATGAATCATAGTGATAACTTTGACACA
TTTTCTCTTGATGAGCAAACCAGAGTTGTAGCTAATGATGTTCAGGAACA
AACTGGTGCAGCATCATCTTGTATTACTTGGGATGAAAAGATAGAAATAG
TGGAACCTACAGGACCACAATATCATTTTAATGAAAATGTGTATGGTCAC
CCTACGAATTCTGACCCAATTCTTTTAGAGGGGGATGCTTCTAATTTTGA
AACTGAATGCTGCAGTAACAAAAGCCCACCAAAATCAGTCTGTGCTGCAC
ATCAATTTGATGAGTATGAGAGTGACATAGACATTTACATGGATTCACGT
AATACCATGGAGTCAGAATCTGAAACTGATTTAGAATGTCAAACGAAGCG
AGAAGTGGAGCAGTATTCAGATATGAACACCATAGCAATCGATGAAAATC
TAAATAGGATTAACCCTGAGTACATGGAAAGCAATTCTGCAAATGCTCCT
ACTCATGTTCCACCTCGTATCTCCACAGATGGTGATATTTCAGACAACCA
CCACCACTCATTTGTCCTTGAATCTAGCTCTGTCCTAAGCAAAGAAATAT
CCACTGCTAAGCCCATTTCCGTAACCCCAGTATGTAATGCACAGGTACAG
TCTCGTGACACAGGCAAATCTTCAATTCTGGACAGTCTGTCTTCTAGTGA
GTTAATCGATAGTGATGATATGACTAGCTCCAAAACAGAAACTGCTGTCA
GAAATTTGTCGTCCTTTGACTCGAATGAACTAGTAATTCAGGCTTTAAAC
AGTGATAAAGTCTTAAGCAATGCATATGGGTCACAAGATTCTCCGTCACT
GCCTTCTGTTACTGGAACAAACTTTTGGACAAATGGTGGACTACTGGGGC
TTCAACCATCAAAACCCCCTGACTTCAGTACGCCAGGTCCTATGAATCAT
GACTCCATGGGTCCAAGCCGAGGTAAAACTTTTGAGGGCAATAAACTTGC
ACCAGAAACCGATATCTCTGAGGGTTTTAAAGTGCCTAAACAGAAAAGTA
GCTCTAAACACTGCATATCGCTCTATAATGATCAGGAAGATAGTACCTCT
GTCATGAAAACATCTTTGAGTTCTTCACAAACTCATTCAGAAAGTAAAAA
TCAACATACTGCCATTTGTCAGCATAATGATAGTCAGTTCCAGAATCTAC
TTTTCTCTGAAGCCAGTATTATGATACCTGGAACTAAAAAACCGGATAAT
CTGAATTTTGAAGCTGCTAAATCTCTTGGATATATTGACAAGAATTCATC
TCGGATTTTTGAATTAAGCAATGAAGTACTTGATAACAGTCAAGGTAAAG
TATGTTTTTCTCTTGAGGACAATCCTCTCAACTCTTTCACAAGTGGTATA
TCTGAAAGAAATAGTGTGCATCAAACATTTCAAACCTTCTCTGATAGGAT
CTTCACAGAGCAGTTTGGAACTAAATTTTCATTCATATCACCGTCATCTT
CTCCACCGCTTGAACATATGAAGATATCTTTTCAGCCTATAGATGGATTT
GAGGTATCAAAGCTGAAACTGGATTTCCCTGGTGGAAATGAGTCTCTAGA
AGGTGGTAGAGATGTCTTTCCTTCTTTTCAACTAGTCCCAGAAGTGTCTC
TTTCATTGCTGGACATTAATTCAGACTCTGATGACACTTTTTGTGATTCA
AATTCTCACGGGTCAGATGATTCTATCACTCATTACTCAGTGTCATATTT
TGAAGAATGGGGAACAATAGAATATCCTAAATGCGATGATAGTGATATGT
CTGATGCTTTATGCATAAACTCAATAGAATCAGTTTCAAGTAACTTGGAT
TTTGGGAGAATTGCTCCGGGAGTAATCACCAGCAATAGTGGACTTCCAAA
TCTATTTTATGAGAAAGTTATGGAACATTCAGAAACAGATCTTCCAAGTT
TTGATACTTTAGATGATTCAATCAATGAGGAATTACAGAATGATTCTAAA
GCAAAGATTGAACTGGATTCAGGACCACTTAAGGATTCCACACTGTCACC
TACTCTCCCTCCAACAGAGTGCGGTATGAACGAAAATCCAGATATGGCAA
CTGAGAACCAAGTTCCTTCTGTTAAAGCCCTAAAACATGAATTTGATCAG
AAGCTTCAATTTTCCACAATCTCCCACCAACAGAAAGTAGAACCATTTAA
TCATGGAAATATGGAGACAATTGGATGTACGAAAAATAAAAAGCATCCAG
ATGGCCAGAAGCTCAATTTACAGAAGGATTCTAATCAGTCCCCAAACAGC
AAGGTGACAGATGAAAACGAAGATTTCCTTCAACAGATTAGGTCAAAATC
CCTTAGCCTTAGGCGCACAATAATCGAACGGCCTAATCTTGGTCCGGGAG
TGCCTACAAATGTTTCGGTCACTGCAATTTTGGAAAAGGCAAATGCGATT
CGCCAGGCTGTTGGAAGCGATGATGGGGAAGATAACGATAGTTGGAGTGA
GTGAGCGAGCCAACATGATGTGTTGTAATTTAAAGTTTATCGGTGATGCA
CTGATGCTCTGGTATATGTGTGAATAGTTACACCTCTATATATTCATCTG
TACTTATTTTGTAGGGTATATGTTGTATCGTTTTCAGGTTTATTTTCTAA
AATAGCATGACTTTATGTTGTAATAAGTTGGATCAGACAGCTAGTTCCAC
TACATTGTAATTCCTAATTCTGCATGGTGCCTAAAATAATAGATAGCACC
TAGCTTCGCACTTATTGAATTCATCCCTTCTGCCGTTGCAAGTTATACAA
TGACTAACAGAATTTAAAGTTTC

Sequence Length

3923

Sequence MD5 Checksum

93b4be3df982c9f8c98be7e392c9057b

Relationship

The XM_017379333.1 derives from mRNA XM_017379333.1
The mRNA XM_017379333.1 is a part of Gene LOC108208800
The XM_017379333.1.exon1 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon2 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon3 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon4 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon5 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon6 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon7 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon8 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon9 is a part of mRNA XM_017379333.1
The XM_017379333.1.exon10 is a part of mRNA XM_017379333.1
The XP_017234822.1 is a part of mRNA XM_017379333.1

Database Reference Annotations

Analysis

Is Analysis

False

Is Obsolete

False