XM_017374711.1 | CarrotOmics Tripal4

Gbkey

mRNA

Gene

LOC108204981

Model_evidence

Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns

Name

XM_017374711.1

Organism

Daucus carota subsp. sativus

Product

small RNA 2'-O-methyltransferase, transcript variant X1

Transcript_id

XM_017374711.1

Type

mRNA

Unique Name

XM_017374711.1

Sequence Residues

ATACGGCAGTCGCTCCTCTAAAACCCCAGACAGTCAAGTGGAAGTCTTGA
AACACCTGACTGATTCTCTTTTGTTTTACTCTTGTCTGAAATCAAACCCC
TTTTCCATAACAACCTCAATTATACGCTCTTTCAACGTCCGTACATTCAA
CCCATTTTTAAGGTTATAGGGCTGTTGATCATTTGGGAAAGGTGTAATGG
GATCTCAAGAAAACCCAGTTCTTGCCTTGAAGCAAAAGACGCTTACCCCG
AAAGCTATTATACACCAGAAATTTGGGGCCAATGCAGTGTACAAGGTCGA
GGAAGTAAAGAAGTCTGCTGATGATGGAGGCCCGCGGCTTAATTTACCAC
AGAAGGGTCCTTGCCTCTTTCAATGTTCTCTGCAACTTCCGGAAGTTACT
GTTGTTTCTGAGCTGTGTAAAAAGAAAAAGGATGCTGAGCAATCTGCTGC
GGAGAAGGCTATTGAAAAGCTCGGCATTACCTTGAGTATACCCACCGCGC
AAGAAGCAGGGGATGAAGTGGTTGGTCGTCTCTCATATTTATTTTCAGAT
ACGTTCTATACGACTGTTCATCCGTTGAGTGGTCACTTCAGGGCAGCCTT
GCTGAGAAAGGACCAATTCTATGGTTATGTCCCTGTTTCCGTGATATCCT
TTTTTGATTCAAAGCTTTTAAATTTATGCAAATGCATAAATCCTGAAGTT
GAGACCAATTCATGGTTGGCGGTGCCACTAATTTTGAAGGCTGCTGCTAG
AGTACCATTGTTAATTTCTGAGGATCATCTTTCAATACGAAGGCCAAGTC
CCTATCCTCCTGAAGTTCTGCAGGCTGTAGATAATCAGCTATCAAACTTG
CCAGAAAGCACTTGTATTAGAGCAGTACGCATCCCATGCTTAGTTGATAA
GATTGTTGAACCCTTGCTTTTTAATATTTCTATTAATGGGTACTATCTTG
ATGCTATTGCACAAGAGCTTGGTGTAACGGATGCCTCTAAAGTTCTGGTT
TCCAGGAGTGTTGGCAAAGCTTCATCAGAGACTAGATTGTACTTCTGTAC
TCCACAGTCGTATATGCTGAATGTATCCTCGGAGTTGGGTGAAGAAATAA
CAACTGATGGAACTTTAAATACAAGAGCAACTTTCCTATCTGGTCAAAAG
ATCTACGGGGATGCAATATTAGCCTCAGTTGGGTACACATGGAAGTCTAC
TGATATCTTCTATGAAGATGCATCCCTGCGTTCATATTTTAGGATACTTA
TTAATAAGGTGCCAGATGGTGTTTATAAGCTATCTAGGGAGGCGATATTG
GCAGCAGAAATGCCTACAGCATTCACCACAAGAAGCAATTGGAGGGGATC
TTATCCCAGGGATATCCTCTGTACGATTTGCCGCCAGCATCGGTTATCTG
TACCTGAAATTATCTCCTTGGAAAATGCAGAAGTGCCAGGAGTACATAAG
AAAATGAAGCTTACAGATCCTCGTGAACAAGAAACAAATGGAGGTGGTGT
TGCTTTAGGTGTTGCTGGAGTCGGAGGAACTTTCAAGTGTAAAATAAAAA
TATTTTCAAGGAGTCAGGAACTGATTATGTGTTGCACCCCAAAAGAATCA
TTTAAAAAGCAAAGTGATGCCATCCAGGATGCTGCACTGAAAATTCTCAC
ATGGCTGAATAATTACTTTCAAAACCCAGAGATATCTGTTGAGAACTTGA
CTACATCTGGTCATGAAATTGATATCCAATTTTATCCGCAGTGCTTCTTT
AAGGAGTTCAAACTATACCAATCAGTGCATAATTCTAGCAGATTGCTAAA
TTCTGACTGCTTGAGTAGAAATACAGGGTTTTTAAAATCTACCATGTTTT
CAGTAAATGACAATGATCAAATGTTAGGAGTTTCATTATCAACTGGGTCA
TTGGCGTGCATTAGTTATAGCATATATCTATTGGCAGGAGAATGCATGAA
GGAACAACTTGAAAGTAGTGAAGAGTTTGAATTTGAGATAGGGGTTAAAG
CCGTGTCCCCCCATTTTGAAGCTGTTGTGACACAGATGTCTTTGGGTCAG
TCAATTTCTTATAATAAGGAAGTGCCGTCCATTGAGTTAATTATGGCTGC
TGCTACTGATCCTGAAAGAATTCTTTCGCTATTGAATTCAGGAGGCTGCA
GTTTGGAGTACTCGATTACTTTACTGCGGGTGACAGAACCCTTGGAGGAG
AGAATGGAGCAGGCACTCTTTAGTCCTCCTCTATCGAAGCAGCGTGTTGA
TTTTGCATTGCAACAAATTAAAGAATCTTGTGCAGCTTCCTTGGTTGACT
TCGGATGTGGGTCTGGAAGCCTGTTGGAATCCTTGTTAGCATATCCGACT
TCTTTGGAAACGATTGTTGGCGTTGATATTTCACAGAGGAGTCTTGCCCG
GGCAGCCAAGATACTACATACCAAACTAACTACCAAAACAGAAGCTGGAA
GTAGTAGAATCAAATCTGCATTGCTTTATGATGGTTCAATCACAAGTTTT
GATTCTCGGCTGTATGGATTTGATATTGGAACTTGTTTAGAGGTGATTGA
GCATATGGAGGAGGATCAAGCCTTTCTATTTGGTGATGTTGTGCTAAGCA
GCTTCCGTCCGAAAGTTCTGATTGTTTCGACCCCAAACTTTGAGTACAAT
GTAATACTGCATAAATCTACTGTACAAGGTCCAGAAGATGACCCAGACGA
GAAAAATCAATCACAGTCCTCTAAGTTTCGCAACCATGATCACAAATTTG
AGTGGACCAGAGAACAATTCAATGACTGGGCGACAAAGCTTGCAGAGAGG
CATAACTACAGTGTTAAATTCAGTGGAGTTGGCGGGGTTGATGGTGTGGA
ACCAGGGTATGCTTCCCAAATTGCTGTATTTAGGAGGGAAGGCGATGACT
TTCCGGAAAATGTCAGCTCGGCTCATCACTATGATATAATATGGGATTGG
AGCAGCAACAGTTCAAGTTCACTCGAGTAAATGTAGTATATTCAATTTTT
GCTCTAATATATTCTCTTTATATTGGAGACACTCATTTTCACGACTAGTG
GATGCACATCATTAGTTTATGGAGAAGATGGAGTTAAAAACTAATTGCCT
TGTCAGAAAGGCTAATTTCTCAGTGATATATTCGACCTGATACCGTGCAT
TACAGTAGTTTACAAGTTTTTCTGTTGA

Sequence Length

3178

Sequence MD5 Checksum

323eb0a75dec899ebc39da383d4c2617

Relationship

The XM_017374711.1 derives from mRNA XM_017374711.1
The mRNA XM_017374711.1 is a part of Gene LOC108204981
The XP_017230200.1 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon10 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon9 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon8 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon7 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon6 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon5 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon4 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon3 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon2 is a part of mRNA XM_017374711.1
The XM_017374711.1.exon1 is a part of mRNA XM_017374711.1

Database Reference Annotations

Analysis

Is Analysis

False

Is Obsolete

False