DCAR_004290 | CarrotOmics Tripal4

Cds

>DCAR_004290cds ATGGATTATGGTCGAGATTCTAGCGGAGATGTTGTCCATATAATTCCCGG AAACCACGGAAGCGGAGGTGGAAATTGGGGTTCGGGGTCTACGGATCAGG CGGTTTGGGCAACTGAAGAAGATTATGGGGCTTGGAATAGGGAGGCTTCG GTTGATGGTAATTCGAATTTAGATGGGAGGCAATCTCAAACTCGATCGGG GAGCGAACCTCCTAACAAAAAATCAAGAATCTTGCAGCCAGATGTGCAAT CAACTAATCGGTCAAAGGCGATCGGAAAGATGTTCTTCAAAACAAAGCTC TGTTGCAAATTTCGAGCTGGAACTTGCCCTTATGTCACTAATTGCAATTT TGCGCACAGTATCGAAGAGCTTCGAAGGCCACCTCCGAATTGGCAAGAAA TTGTTGCTGCTCATGAGGAAGAACAAACTGCAAACGAGCCAAGGGAAGAA TTTCAAATTCCTACACTTGGGTCTACTGCTTTTCCTGTGGAACCTCAGAG GTCTTCTAAAGGGCGACATTGTAAGAAGTTCTTTACTGAAGAAGGCTGCC CCTATGGTGAAAATTGCAGTTTTCTACATGATGACCAATCAAGAACTCGA GAAAGCGTGGCAATAAGTCTGGGGCCTGGGTCTGGTGGTGGATATGGTGG GAGTGCTAATGCTGGTGCCGGCAGCGGTGGTGTGAGTCCATCTACATTGA AGCCTTCAAATTGGAAAACTAGGATTTGTAACAAGTGGGAACAGACAGGT TTTTGTCCATTTGGGAACAAGTGCCATTTTGCTCATGGGGCTGCTGAACT CCATCGTTATGGTGGTGGACTCGTGGATAGTGATGGAAAAGAATTCTCCT CTCCTTCAGACACAAAGCAGGGGACGGGGCTTTCTAAATCTCCGGGGGAT ACCTTAGTTGCTTCCGTACCTTCAGTTCCTTATGCAGACGGTTATCACAT GGGAGGTTCATCTCAAAGGGTCTCCAATATGCCGAGGGCAGGACCAATTT TGAACCAAAAGTGGAAAGGTCCTAATAAAATTAGTCTAATCTATGGTGAC TGGATCGAAGACCTTGAGTAA

Locus_tag

DCAR_004290

Name

DCAR_004290

Organism

Daucus carota subsp. sativus

Pep

>DCAR_004290pep MDYGRDSSGDVVHIIPGNHGSGGGNWGSGSTDQAVWATEEDYGAWNREAS VDGNSNLDGRQSQTRSGSEPPNKKSRILQPDVQSTNRSKAIGKMFFKTKL CCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEQTANEPREE FQIPTLGSTAFPVEPQRSSKGRHCKKFFTEEGCPYGENCSFLHDDQSRTR ESVAISLGPGSGGGYGGSANAGAGSGGVSPSTLKPSNWKTRICNKWEQTG FCPFGNKCHFAHGAAELHRYGGGLVDSDGKEFSSPSDTKQGTGLSKSPGD TLVASVPSVPYADGYHMGGSSQRVSNMPRAGPILNQKWKGPNKISLIYGD WIEDLE*

Sequence Coordinates

DCARv2_Chr1:46538804..46541473+

Type

gene

Unique Name

DCAR_004290.gene

Sequence Residues

ATGGATTATGGTCGAGATTCTAGCGGAGATGTTGTCCATATAATTCCCGG
AAACCACGGAAGCGGAGGTGGAAATTGGGGTTCGGGGTCTACGGATCAGG
CGGTTTGGGCAACTGAAGAAGATTATGGGGCTTGGAATAGGGAGGCTTCG
GTTGATGGTAATTCGAATTTAGATGGGAGGCAATCTCAAACTCGATCGGG
GAGCGAACCTCCTAACAAAAAATCAAGAATCTTGCAGCCAGATGTGCAAT
CAACTAATCGGTCAAAGGCGATCGGAAAGATGTTCTTCAAAACAAAGCTC
TGTTGCAAATTTCGAGCTGGAACTTGCCCTTATGTCACTAATTGCAATTT
TGCGCACAGTATCGAAGAGCTTCGAAGGCCACCTCCGAATTGGCAAGAAA
TTGTTGCTGCTCATGAGGAAGAACAAACTGCAAACGAGCCAAGGGAAGAA
TTTCAAATTCCTACACTTGGGTCTACTGCTTTTCCTGTGGAACCTCAGAG
GTCTTCTAAAGGGCGACATTGTAAGAAGTTCTTTACTGAAGAAGGCTGCC
CCTATGGTGAAAATTGCAGTTTTCTACATGATGACCAATCAAGAACTCGA
GAAAGCGTGGCAATAAGTCTGGGGCCTGGGTCTGGTGGTGGATATGGTGG
GAGTGCTAATGCTGGTGCCGGCAGCGGTGGTGTGAGTCCATCTACATTGA
AGCCTTCAAATTGGAAAACTAGGATTTGTAACAAGTGGGAACAGACAGGT
TTTTGTCCATTTGGGAACAAGTGCCATTTTGCTCATGGGGCTGCTGGTAC
GTTTTGTTTAAACTCCATACTTCTTATTCCAGTGAAAAAACATTGGTGCC
TTTTAGTTTGTCATAGTTTACTATTCATATGTTGAAATGCTCAATTTCAA
AGATGAGGTGATTATACCTACTTACAAATGCAAGTATGCAACTAGCAAGT
AATTATGCTAGCTACAGTACCATTTCAAGGTCTTCTGTCTAGCTTGTAGT
TAGATTAGATTTATTTCGGTCTGTTTGCTAATGAACTTGAAAATAAATAT
TTTGATTGGACGCCATTAACTTCAAAATAATTACAGCTCTTTGGCAATAA
TGATTATAAAAACTTTATTATACTGCAGAAGTGGATGCAGTAAGATGTAT
GTAAATAGATTTAAATTAGGCATATATTGCTACTAAACTTTAGGGTTCTT
GCCGTACATAGGGAAATAACAGATAGAATAGGCACTTTGAGTGGCTTAAG
GACTCCCAAAATGAAAGATAAACAATTGAAATCTCAATAATGGTTTCCTT
CCTTCCACGGTCTTTTACTTATAACAAAATATGTAGCTGAATTCCTTTCT
TGCCCTTCCCTCCACAATATGTTATTAGCCTGGGGTTTCCTTTAAAAACC
ATTGTTTCCCGCCCAATCTCGAACTTCATTTCTTGCAGCTTCCAATTTAT
GGTAACTGATCCTAATTTTTCTAACCACTGATTCTCAATGTTACAACGGA
ATTGCCCAATGAAAATGGCAAGAAATCTTCAACTACCTCAACTGTCCCCA
TGCACAAAACCATCCCTTTGCGCTCCCCTGTCCCTTTTATCCTCCCTGTT
GATTAGTGTCACTCCAAAACCATTGTTAGCCTCAAGTATACAAAAGTAGC
ACTGATGGCATGCTGACATATTTCTAGAGCATTCTTAGTGCTGTTTGCTT
TGAAAGAGAGATGAATATATACATTTACCACCTAAAAACAGTCCACCTGA
ACCCAATATTTATGGTTATGCTTACCATATCTATGGCCACTCTTTATATT
TCTGTTACAAATTTTTCTGTAAAATGTAACATAGGTAAGTTGCTTATTGC
TAATTAGCGTTGTTATTGGGGTTACTTTTGAAACACATGGTTCTTTTGAA
ACACATGGTTCTGGTTGTTGAATCATGATTCATGTCCCAGTGATGGGTAA
CCATTATTCTATTAGCTATAACCCTCGCAAGCCAGTTATTACATTGTGGT
TTCTGTTCCCAGACTATGGGGTTGCTGTTCCCAATATCCTTGAAATTTAA
CAAGCAGCGTGTGTTGAAAGAAGTAGCCACAAGTTAGGTCTTGCAGTGCG
ATACATATTATTTTTCTTCTTGCAATTCCCTACTTTCGATTGGCAAACCT
TGGTAAGGAATCTACTCGAGGAAATCCATACCTCTAGTTACAAAATCTTT
CCGGTACTTTTCTCGTATTAGAATCATATGACTGCCTTCTGTTTCAGTTT
TCCGATGGGTATCCTCCAAATGATGAATCATCACTATAGCAGAACCTTTT
CTGCATTTAGTTGATCTGACAATTTTATGTTGCATTAATGTAACATATGT
AATTTTATTGATTTTCACTGTTTTGTTTGCAATGTTTAATACAGAACTCC
ATCGTTATGGTGGTGGACTCGTGGATAGTGATGGAAAAGAATTCTCCTCT
CCTTCAGACACAAAGCAGGGGACGGGGCTTTCTAAATCTCCGGGGGATAC
CTTAGTTGCTTCCGTACCTTCAGTTCCTTATGCAGACGGTTATCACATGG
GAGGTTCATCTCAAAGGGTCTCCAATATGCCGAGGGCAGGACCAATTTTG
AACCAAAAGTGGAAAGGTCCTAATAAAATTAGTCTAATCTATGGTGACTG
GATCGAAGACCTTGAGTAA

Sequence Length

2669

Sequence MD5 Checksum

0337058151a2369b0f676e13d9467def

Relationship

The mRNA DCAR_004290 is a part of Gene DCAR_004290
The Genetic Marker MK007429 TP45840 is located in Gene DCAR_004290
The Genetic Marker MK004520 K1964 is located in Gene DCAR_004290
The Genetic Marker MK016892 1_46539218 is located in Gene DCAR_004290

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False