DCAR_017636 | CarrotOmics Tripal4

Cds

>DCAR_017636cds ATGGAAGGTAATGGTATGCCTAATGGGATGTTTTCTGGTATAAATTCTGG AATGTTGGGGCTTGAAATGTCACCACAGCAGTATCAGCATTTACAGGCCC AGCAAAACCCTCAAAACCCCCAAAACCCTAACTTATCTCAACAACACCCG CACACACATCACACTATGGTTTCTTTTGGGCAGAATGAGGTTGATCATCA CCACACTCAGAATCAGCAAGCTGTTAAACAGGGTTATCCGTATGGCGCGA AGCCTCGGACTCAACAGCTGACATTTAGTGATGATGATGAGGCTGGTGTT GGTGCTGAGGATAGTGGTGGAAAGCGGAATGCTTCTCCTTGGCAGAGGAT GAAATGGACTGATGGGATGGTGAAGTTGTTGATTATGATGGTGTTTTATA TTGGGGATGATCAAGGGGTTTCGGAAGGGAATGATGTGGCGGGGGAGAAG AAGGGTGGTGGTGGAGGTGGGGCTTTACAGAAGAAAGGGAAGTGGAAATC GGTGTCTAAGGCTATGATGGAAAGGGGGTTTTTCGTGTCTCCCCAACAAT GTGAGGATAAGTTTAATGATTTGAACAAGAGGTATAAGAGGGTTAATGAT ATACTTGGGAAGGGAACTTCTTGTAAGGTTGTGGAGAATCAGAGTTTGCT TGATACGATGGATCATTTGTCGCCCAAAATGAAGGAGGAAGTTAGGAAAT TGCTGAATTCTAAGCATTTGTTTTTCAGGGAAATGTGTGCCTATCATACT AGTTGTAATGGCGGTGCTCAGCATTCAGCAGAGGCAGGAGCGGATTCGTC TCATGTCCAGCAGCAGCAGCAGCAGCAACAAAGAAGGACATGTTTGCATT CGTCTGACAACTCACCGAATGTGCATAATTTGGGTAGAACAGACACCGAA GGGTCTAAGATGATGAAAGGGGTAAGCGTGGAAGAAGAGGATGATGATGA GGACGACAATGATGATGAAGATGAAGATAATGATGAAGTGGAAGGTGGTG CAAGAGGTCATGAACATGAATCTGATTTAGATGTTAAGATCACCTCGCAC AAAAGAACAAGAAACGAAACGTATGCTCCGGATTCAAATTCATTCCAAGA ATTCAATAATGAATTGAAATATGTAATACAAGATGGTACAAAGAGTTCAT GGGAGAAAAGGCAATGGATGAGGATCCGGTTGATGCAATTGGAAGAACAT CGAATGCATCATCAGTGCCAGGCATTTGAACTGGAAAAGCAGAAGATGAA ATGGCTGAAGTTCAAGCACAAGAAGGAGAGGGACATGGAGGCAGAGAGGC TAGCCAACGAGCGAATGAGGCTCCAAAATGAGAGAATGGTTCTTATTCTT AGGCAGAAAGAGCTGGAATTGCTGGATAGTCAACAGCAACATCAGTCATG TAACAGGAGTTCCATGGCTGGCTAG

Locus_tag

DCAR_017636

Name

DCAR_017636

Organism

Daucus carota subsp. sativus

Pep

>DCAR_017636pep MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHP HTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGV GAEDSGGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEK KGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVND ILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHT SCNGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTE GSKMMKGVSVEEEDDDEDDNDDEDEDNDEVEGGARGHEHESDLDVKITSH KRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEH RMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLIL RQKELELLDSQQQHQSCNRSSMAG*

Sequence Coordinates

DCARv2_Chr5:21875415..21877291-

Type

gene

Unique Name

DCAR_017636.gene

Sequence Residues

GCATAAACAAAATGCAAACAGTATTGCTCAAACCCGTGTTCTATCTCTCT
CTGCGTATAAACTTCGGCAAACCAAAACCATGGGCAGTATAACCAGGTAC
CCCGCTCTTTGTATTCTCCCAGTACATTGTATCCTCTTCTTACACCATTT
CTATTTATTTATATACTCCTATCACTTTTATATCCTCCATCTTCCATTCT
ACTTTTCAGCTTTGCATCTCAATCTCACTCCTTCTCTTTATCCCAGTACA
GAACTACATATACACACACATACTAGTAATACCATTGAAAATAGTTGTTC
AAAGTTTGAATTTTGGCACCTGGGTTTTGTTCAAAATTGTTTCTTTTTAG
GTGGGTCTGCTTTGGTTTCTTTTAATTCTCTTGCTTTTGTGTTCGTTTGT
GGTGTTCTTGTTGTGTCAATTGGGTGTATTTTGAATTGTGAAATTTTGGT
AATGGAAGGTAATGGTATGCCTAATGGGATGTTTTCTGGTATAAATTCTG
GAATGTTGGGGCTTGAAATGTCACCACAGCAGTATCAGCATTTACAGGCC
CAGCAAAACCCTCAAAACCCCCAAAACCCTAACTTATCTCAACAACACCC
GCACACACATCACACTATGGTTTCTTTTGGGCAGAATGAGGTTGATCATC
ACCACACTCAGAATCAGCAAGCTGTTAAACAGGGTTATCCGTATGGCGCG
AAGCCTCGGACTCAACAGCTGACATTTAGTGATGATGATGAGGCTGGTGT
TGGTGCTGAGGATAGTGGTGGAAAGCGGAATGCTTCTCCTTGGCAGAGGA
TGAAATGGACTGATGGGATGGTGAAGTTGTTGATTATGATGGTGTTTTAT
ATTGGGGATGATCAAGGGGTTTCGGAAGGGAATGATGTGGCGGGGGAGAA
GAAGGGTGGTGGTGGAGGTGGGGCTTTACAGAAGAAAGGGAAGTGGAAAT
CGGTGTCTAAGGCTATGATGGAAAGGGGGTTTTTCGTGTCTCCCCAACAA
TGTGAGGATAAGTTTAATGATTTGAACAAGAGGTATAAGAGGGTTAATGA
TATACTTGGGAAGGGAACTTCTTGTAAGGTTGTGGAGAATCAGAGTTTGC
TTGATACGATGGATCATTTGTCGCCCAAAATGAAGGAGGAAGTTAGGAAA
TTGCTGAATTCTAAGCATTTGTTTTTCAGGGAAATGTGTGCCTATCATAC
TAGTTGTAATGGCGGTGCTCAGCATTCAGCAGAGGCAGGAGCGGATTCGT
CTCATGTCCAGCAGCAGCAGCAGCAGCAACAAAGAAGGACATGTTTGCAT
TCGTCTGACAACTCACCGAATGTGCATAATTTGGGTAGAACAGACACCGA
AGGGTCTAAGATGATGAAAGGGGTAAGCGTGGAAGAAGAGGATGATGATG
AGGACGACAATGATGATGAAGATGAAGATAATGATGAAGTGGAAGGTGGT
GCAAGAGGTCATGAACATGAATCTGATTTAGATGTTAAGATCACCTCGCA
CAAAAGAACAAGAAACGAAACGTATGCTCCGGATTCAAATTCATTCCAAG
AATTCAATAATGAATTGAAATATGTAATACAAGATGGTACAAAGAGTTCA
TGGGAGAAAAGGCAATGGATGAGGATCCGGTTGATGCAATTGGAAGAACA
TCGAATGCATCATCAGTGCCAGGCATTTGAACTGGAAAAGCAGAAGATGA
AATGGCTGAAGTTCAAGCACAAGAAGGAGAGGGACATGGAGGCAGAGAGG
CTAGCCAACGAGCGAATGAGGCTCCAAAATGAGAGAATGGTTCTTATTCT
TAGGCAGAAAGAGCTGGAATTGCTGGATAGTCAACAGCAACATCAGTCAT
GTAACAGGAGTTCCATGGCTGGCTAG

Sequence Length

1876

Sequence MD5 Checksum

93791391a0267e83c5d28bc8368df5e3

Relationship

The mRNA DCAR_017636 is a part of Gene DCAR_017636
The Genetic Marker MK002726 K0170 is adjacent to Gene DCAR_017636

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False