DCARv2 Y2 Mapping Variants JBrowse VCF

Name

DCARv2 Y2 Mapping Variants JBrowse VCF

File Type
VCF
Description

78,850 SNP variants from the F4 population 74,146. This is the VCF file used for JBrowse. See the linked analysis below for further details.

Note that this set of 78,850 SNPs was submitted to dbSNP at NCBI under BioProject PRJNA348698, however dbSNP dropped support for non-human genomes after publication, and the variants were not archived, and are not available there.

File Location
Download File Name Available at Size MD5
y2map.dcar.vcf.gz CarrotOmics Tripal4 24658400 ef21d5aad6c7a89699afcb98b2b98f05
y2map.dcar.vcf.gz.tbi CarrotOmics Tripal4 143202 a5812d923a7d3aa044591a1d4275effc
Relationship
The File Carrot Genome Assembly DCARv2 Sequence Original Naming Scheme is reference genome File DCARv2 Y2 Mapping Variants JBrowse VCF