10.1007_s00122-021-03901-3_Supplementary_file2

Table S1: Genomic coordinates and predicted amino acid changes of SNPs identified within the Or CDS of the wild parent (Z007) relative to the reference genome (representative of cultivated carrots)

Table S2: Phenotypic means, standard deviations (SD), minimum, and maximum values for carotenoids by Or genotypic classes (A = Orc, B = Orw). Values are in µg/g except for beta-carotene : total.

Table S3: Phenotypic means, standard deviations (SD), minimum, and maximum values for carotenoids by environment

Table S4: Summary of the genetic linkage map in cM for the B493 X Z007 F3 Population

Table S5: Summary of the genetic linkage map in physical coordinates for the B493 X Z007 F3 Population

Table S6: Additive effects (in µg/g DW) for significant QTL contributing to variation in carotenoid content, where allele “a” is contributed by B493 and allele “b” is contributed by Z007 in the B493 x Z007 F3 population. Or is located near S3_5091832 on chromosome 3.

Table S7: Chromosomal locations of QTL controlling carotenoids traits in the B493 × Z007 population in the greenhouse environment (WIGH2018). PVE = Percent variance explained.

Table S8: Additive effects (in µg/g DW) for significant QTL contributing to variation in carotenoid content in the greenhouse environment (WIGH2018), where allele “a” is contributed by B493 and allele “b” is contributed by Z007 in the B493 x Z007 F3 population. Or is located near S3_4010876 on chromosome 3.

Table S9: Chromosomal locations of QTL controlling carotenoids traits in the B493 × Z007 population in the field environment (CA2018 and CA2019). PVE = Percent variance explained.

Table S10: Additive effects (in µg/g DW) for significant QTL contributing to variation in carotenoid content in the field environment (CA2018 and CA2019), where allele “a” is contributed by B493 and allele “b” is contributed by Z007 in the B493 x Z007 F3 population. Or is located near S3_4010876 on chromosome 3.

Table S11: Phenotypic means, standard deviations (SD), minimum, and maximum values for carotenoids by CH genotypic classes (A = CHc, B = CHw). Values are in µg/g except for beta-carotene : total.

Table S12: Known carotenoid biosynthetic genes and their physical positions in the genome as reported in Iorizzo et al (2016). CH (Beta-ring caroene hydroxylase) is highlighted in orange.

Table S13: Linkage map constructed for the B493 x Z007 F3 family. Genotypes are in A, B, H format for R/QTL input

Table S14: Phenotypic data for root carotenoid content quantified by HPLC