Phylogenetic Tree Search

Name Sort descending	Phylogenetic Tree Type	Notes
10.3390/ijms22189713 Figure 4 Plastid	Species tree	Phylogenetic relationships were inferred from 53 species of the Apiaceae family by using Panax notoginseng (Arialaceae) as an outgroup. The 54 plastid genomes were retrieved from GenBank and aligned using MAFFT v7.450 under default parameters;…	View
10.3390/ijms22189713 Figure 4 rbcL	Species tree	Phylogenetic relationships were inferred from 53 species of the Apiaceae family by using Panax notoginseng (Arialaceae) as an outgroup. rbcL sequences were extracted from plastid genomes retrieved from GenBank and aligned using MAFFT v7.450; the…	View
CarrotOmics Taxonomy Tree	Species tree	All organisms referenced by CarrotOmics that have an NCBI taxon assigned. Organisms not recognized by NCBI are not included in this tree.	View
TreeBASE Tree Tr115096	DNA	TreeBASE Tree Tr115096 from study S23618. This tree corresponds to figure 1 in the referenced publication. Strict consensus maximum parsimony tree of 48 trees (tree length 8341) constructed with ten nuclear orthologous gene sequences of allele set B…	View
TreeBASE Tree Tr119314	Species tree	Sixty taxa were surveyed for molecular markers, life history, and habit traits. Twenty‐one species were considered for wood anatomical characters. A dated phylogeny was estimated using Bayesian methods. The evolution of selected traits was…	View
TreeBASE Tree Tr1693	DNA	TreeBASE Tree Tr1693 from study S1104. Fig. 1. Strict consensus tree of 32 minimal length 524-step trees derived from equally weighted maximum parsimony analysis of 88 ITS sequences (CI’s 5 0.66 and 0.64, with and without uninformative positions,…	View
TreeBASE Tree Tr1694	DNA	TreeBASE Tree Tr1694 from study S1105. Fig. 1. Strict consensus of 20,000 minimal length 881-step trees derived from equally-weighted maximum parsimony analysis of aligned ITS-1 and ITS-2 sequences from 150 terminals (159 accessions) of Apiaceae…	View
TreeBASE Tree Tr2083	DNA	TreeBASE Tree Tr2083 from study S1328. Fig. 2. Strict consensus of 192 shortest trees resulting from the maximum parsimony analysis of 33 ITS sequences of 673 characters; tree length = 190 steps; CI = 0.680; RI = 0.853.	View
TreeBASE Tree Tr2084	DNA	TreeBASE Tree Tr2084 from study S1328. Fig. 3. The single shortest tree resulting from the maximum parsimony analysis of 24 ETS sequences of 394 characters; tree length = 126 steps; CI = 0.717; RI = 0.869.	View
TreeBASE Tree Tr2085	DNA	TreeBASE Tree Tr2085 from study S1328. Fig. 4a. Strict consensus trees resulting from separate analyses of ITS and ETS data, each with an identical 21-taxon sampling. A. ITS analysis: strict consensus of 64 shortest trees resulting from the maximum…	View
TreeBASE Tree Tr2086	DNA	TreeBASE Tree Tr2086 from study S1328. Fig. 4b. Strict consensus trees resulting from separate analyses of ITS and ETS data, each with an identical 21-taxon sampling. B. ETS analysis: the single shortest tree resulting from the maximum parsimony…	View
TreeBASE Tree Tr237	DNA	TreeBASE Tree Tr237 from study S1328. Fig. 5. Strict consensus of 4 shortest trees resulting from the maximum parsimony analysis of the combined (ITS + ETS) data set from 21 sequences of 1,067 characters; tree length = 288 steps; CI = 0.685; RI = 0.…	View
TreeBASE Tree Tr2761	DNA	TreeBASE Tree Tr2761 from study S1799. Figure 2. Majority-rule consensus tree obtained from Bayesian analysis of 159 terminals representing Cryptotaenia and most major clades of Apiaceae subfamily Apioideae using a GTR + G + I substitution model.	View
TreeBASE Tree Tr2924	DNA	TreeBASE Tree Tr2924 from study S1957. Figure 1. Strict consensus of 350 minimal length 843-step trees derived from equally weighted maximum parsimony analysis of 147 ITS sequences represented by 83 terminals (CI = 0.5475, without uninformative…	View
TreeBASE Tree Tr3014	DNA	TreeBASE Tree Tr3014 from study S2028. Figure 1. Majority-rule consensus tree obtained from Bayesian analysis of 49 terminals representing Ferula and most major clades of Apiaceae subfamily Apioideae using a GTR + G + I nucleotide substitution model.	View
TreeBASE Tree Tr3015	DNA	TreeBASE Tree Tr3015 from study S2028. Figure 2. Majority-rule consensus tree obtained from Bayesian analysis of 76 terminals representing Ferula s.l., major clades of tribe Scandiceae, and outgroups using a GTR + G substitution model.	View
TreeBASE Tree Tr4547	DNA	TreeBASE Tree Tr4547 from study S1418. Fig. 4A. Maximum likelihood (ML) and Bayesian phylogenies. (A) Single ML tree derived under the GTR + G model of nucleotide substitution (–lnL = 3153.10211).	View
TreeBASE Tree Tr4594	DNA	TreeBASE Tree Tr4594 from study S1524. Fig. 1. Majority-rule consensus of 33408 shortest trees (each of length 507 steps; CI = 0.641, excluding uninformative characters; RI = 0.890) obtained from maximum parsimony heuristic searches using a 59-…	View
TreeBASE Tree Tr491	DNA	TreeBASE Tree Tr491 from study S1418. Fig. 2. Strict consensus of 144 minimal length 1218-step trees (corrected CI = 0.44, RI = 0.72).	View
TreeBASE Tree Tr5063	DNA	TreeBASE Tree Tr5063 from study S1979. Figure 1. Strict consensus of 2,711 minimal length 1,959-step trees derived from equally weighted maximum parsimony analysis of 106 nrDNA ITS sequences from Apiaceae subfamily Apioideae.	View
TreeBASE Tree Tr60728	DNA	Tree Tr60728 from TreeBASE study S13876 "Molecular Phylogeny of Daucus". This tree corresponds to figure 1 in the publication, however, branch lengths and parsimony bootstrap values were not included in the TreeBASE submission and therefore…	View
TreeBASE Tree Tr71398	DNA	TreeBASE Tree Tr71398 from study S15477. Original tree name "Tree1". This tree is not present in the publication	View
TreeBASE Tree Tr71399	DNA	TreeBASE Tree Tr71399 from study S15477. Original tree name "Tree2". This tree is not present in the publication	View
TreeBASE Tree Tr71400	DNA	TreeBASE Tree Tr71400 from study S15477. Original tree name "Tree3". This tree is not present in the publication	View
TreeBASE Tree Tr71401	DNA	TreeBASE Tree Tr71401 from study S15477. Original tree name "Tree4". This tree is not present in the publication	View