DCAR_004924 | CarrotOmics Tripal4

Cds

>DCAR_004924cds ATGATGCTCAAATCTCTATTCCACCTCTCAAACCCCCTCACGCGCCACCC CACGCGCCGCCCCTTCAAAGATTTCTACTCAGAATGGCTCCGAACCCTCA AACACACACTCATCCCCCTCCTCCGCCGCTCATTATCCTCAGAATCATCT TCTTCGGCGACCCTCTTGTCGAAACATGTGGAGATGATTCACCAGCACTT TGTGGTGTACTATGATGCTCTTGACAATGCTGCATCAAACGACGTCGCTC AGCTGTTGTTCCCCGAGTGGCGAAGCGCCTGTGAAAAGCCCTTCCTCTGG TTAGGTGATGTGCACCCTTACTTGTTTGCTAAACTTGTTAGGCAATTTCT TGATGACCCTGATGATGAAATTGATGATAATTGTAATGTGCTTCATGTCG GTGACATTTCGGGTATCTTGAATGAGAATTGGCATGTTGTGAATGCTTGG AATAGTCCTAGTAAGGTTTTGATCACACGAATTGATGAAATTGAGCGAGG GTTGAGGCTGATTGTGCCCGCATTGGTGGTTAGGGCGCGAGAGGCGCAGG GGGTTTTGGTTGCGAAATTAGGGGAGGAGTGGGGAAAGATGGCCGAGGCG GTGGAGGGGAATGTGGAGGAGATGGTTAGTGTTTTTGTGGATGCTAATAG GATTAGGAGGAGTGTGCTTTCAGAGATTATTAGTGTCACTAGTGTTTATC AGGCTGCCTTTTTTCTTGAGGCTTTAGCCCAATTCCTTGTTGGGTTTGGG GATAAGAAATTGGTTTCGGAGTTTAGGAGATGGCTAGTGGTTGATGGTGG TGGAGTGAAGAATGGAATAGAAGGCATAGTTGTAGGAATATTGATAGATG GAAAGGAAGGCATTGTGGTGGGAATGGTTGGGAGTGATGCTGGCAAAGGA GGCAGTGTCACCTTGGGGATTGTAGTAGGCATAGTTGGTAGAGACGGTAT TGTTGGAAGAGAGGTAGTTGGCATTGGTGGCAGTGCTGCTGCTTTGGGAA GGCTTGGCATTGCAGGAAGTGGAGGTAATGTGACCTTAGGCAGAGTCGGC ATGGTTGGCAGTGTTGGAATAGTTGGCATCGTCGGTAATGTTGGAATAGC TGGCACTGTTGGCTGTGAAGATTGCATCAAGTGGCGTGCTGCAAAGCTCA CCTCCAAGCTTGAAATCGATAGGGCTAGGACGAAAGCTAGGACAAGGTTG TGGTTGAAAGCAGCCATCTTTGATGTTACTGTCATTACATGGAACATTTT AAGATAA

Locus_tag

DCAR_004924

Name

DCAR_004924

Organism

Daucus carota subsp. sativus

Pep

>DCAR_004924pep MMLKSLFHLSNPLTRHPTRRPFKDFYSEWLRTLKHTLIPLLRRSLSSESS SSATLLSKHVEMIHQHFVVYYDALDNAASNDVAQLLFPEWRSACEKPFLW LGDVHPYLFAKLVRQFLDDPDDEIDDNCNVLHVGDISGILNENWHVVNAW NSPSKVLITRIDEIERGLRLIVPALVVRAREAQGVLVAKLGEEWGKMAEA VEGNVEEMVSVFVDANRIRRSVLSEIISVTSVYQAAFFLEALAQFLVGFG DKKLVSEFRRWLVVDGGGVKNGIEGIVVGILIDGKEGIVVGMVGSDAGKG GSVTLGIVVGIVGRDGIVGREVVGIGGSAAALGRLGIAGSGGNVTLGRVG MVGSVGIVGIVGNVGIAGTVGCEDCIKWRAAKLTSKLEIDRARTKARTRL WLKAAIFDVTVITWNILR*

Sequence Coordinates

DCARv2_Chr2:1776988..1779841-

Type

gene

Unique Name

DCAR_004924.gene

Sequence Residues

ATGATGCTCAAATCTCTATTCCACCTCTCAAACCCCCTCACGCGCCACCC
CACGCGCCGCCCCTTCAAAGATTTCTACTCAGAATGGCTCCGAACCCTCA
AACACACACTCATCCCCCTCCTCCGCCGCTCATTATCCTCAGAATCATCT
TCTTCGGCGACCCTCTTGTCGAAACATGTGGAGATGATTCACCAGCACTT
TGTGGTGTACTATGATGCTCTTGACAATGCTGCATCAAACGACGTCGCTC
AGCTGTTGTTCCCCGAGTGGCGAAGCGCCTGTGAAAAGCCCTTCCTCTGG
TTAGGTGATGTGCACCCTTACTTGTTTGCTAAACTTGTTAGGCAATTTCT
TGATGACCCTGATGATGAAATTGATGATAATTGTAATGTGCTTCATGTCG
GTGACATTTCGGGTATCTTGAATGAGAATTGGCATGTTGTGAATGCTTGG
AATAGTCCTAGTAAGGTTTTGATCACACGAATTGATGAAATTGAGCGAGG
GTTGAGGCTGATTGTGCCCGCATTGGTGGTTAGGGCGCGAGAGGCGCAGG
GGGTTTTGGTTGCGAAATTAGGGGAGGAGTGGGGAAAGAGTGAGGGGGAC
AAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTGAGGGGGACAAG
GGGGTAGTGGCCGAGGCGGTGGAGGGGAATGTGGAGGAGATGGTTAGTGT
TTTTGTGGATGCTAATAGGATTAGGAGGAGTGTGCTTTCAGAGATTATTA
GTGTCACTAGTGTTTATCAGGCTGCCTTTTTTCTTGAGGCTTTAGCCCAA
TTCCTTGTTGGGTTTGGGGATAAGAAATTGGTTTCGGAGTTTAGGAGATG
TAAATTTCCGGTGGATAGTTGAACATTTAAATTAGGAGTTTGTGTGTTGT
GATTTCTTGGTAATCTTGGAGTTAAAGGCAGAGGTCTGCATATGAAGAAA
CTCTCTTATGTAAGTACTTAATTTTTATATTCATGTCGCAATTTTGTGTG
TGATTTATATATGAATTTTTTCTTAGCAGTGTCAATGTGATTTCAGGGAT
CATACACAAGGAAAGGGTGCTTTTGGAGTTTTGGACAGAGTGGTGTAGAT
CTTCAATACGATACTAATATGGTATCATATTTTATCTTGTCATTCGCAAG
TGTTATCTTATTGCTTGGTCTTAGGTTTAAAAGATATGTTTGATAGGAAC
GTTAATGTTGACATAGTTCCTTAATCTATTATTTTGTTTCACATTCCTGT
TTTTGTACTGAATGAGGCAACTGACATATCGAGTACCTTATGACATGAAA
GAAATGTACAGGCCCCAACAAGGATGTATTTTGTTAACTAGTGAATGCAT
GTCTGTTGCTATAGTGAAAATTTATTGCTTAAAGTCGCTGAAGTTTGTTT
GCTTTATGTTATCGAATAAGTATTCGTAGAATGTTGAAAGTAAAAATCTG
TAGAAATCTGTAATATGTTCTATATATCCTTGTAATGCTTGTACATCTGA
TAATCTCGATGCTGATCATGGTTGGTCTTGGTGTTTCCCTCATTTAAATT
ACTGGACTTGAGAAATAGTAGAAGAGAATTGCCCAGGATTTTTTTTGCTT
ATTTATTAATTTAATTATGTTCTGTAATGTTTGGATTAACGTAGTCAATC
AGGAGTTAGAAAAGAGAAGTCTAGGAGTCATTTGAGCATGCTATGTGTTA
GTATTTAGTAAGCCTATCTAGTGAAGACTTTATATCAGGTTTGTTATGAA
ATTAGAAAATTCGAAATCTATCTGTTTCCCTAAAATTTTCTGTTCACCCC
GAATACATCTCTTCTCCCTTCAATATGATATAGCAGGGGGCCATTCAAAT
CCTTTATGCCACCATTAAGACCCAATGTTATATATCTTATTCAAGTCGGA
ATGTAAATATATTCTAAGTAGTATAGTTGTGGCTGCAGATGACTCTAGTT
GTATTATAATCAATGAAGAAAACTTTGTACTGACTTTACTATCCATAAAT
GACCAAATTTGAGAGATGTTCATCAACACAGGTATTAAGGAATCAAATTT
GTATTTATAGTTACAATAAAAAGCAAAAAACGACTCGGGAAAACAATAGG
AATGATATTAATAAGACAAACAAATAGAGAGATACAAGCAAATATGGAAT
CACGACCTATTCCCAAACCATGGAAATAAGTTGTAACAATAGAACAAGTT
CTAAATCCTTGTGTAGATTATCTTAAGGGCTAGTGGTTGATGGTGGTGGA
GTGAAGAATGGAATAGAAGGCATAGTTGTAGGAATATTGATAGATGGAAA
GGAAGGCATTGTGGTGGGAATGGTTGGGAGTGATGCTGGCAAAGGAGGCA
GTGTCACCTTGGGGATTGTAGTAGGCATAGTTGGTAGAGACGGTATTGTT
GGAAGAGAGGTAGTTGGCATTGGTGGCAGTGCTGCTGCTTTGGGAAGGCT
TGGCATTGCAGGAAGTGGAGGTAATGTGACCTTAGGCAGAGTCGGCATGG
TTGGCAGTGTTGGAATAGTTGGCATCGTCGGTAATGTTGGAATAGCTGGC
ACTGTTGGCTGTGAAGATTGCATCAAGTGGCGTGCTGCAAAGCTCACCTC
CAAGCTTGAAATCGATAGGGCTAGGACGAAAGCTAGGACAAGGTTGTGGT
TGAAAGCAGCCATCTTTGATGTTACTGTCATTACATGGAACATTTTAAGA
TAA

Sequence Length

2853

Sequence MD5 Checksum

948d886594dbc6b9cc251d9bc2c0fe9c

Relationship

The mRNA DCAR_004924 is a part of Gene DCAR_004924
The Genetic Marker MK011730 2_1777159 is located in Gene DCAR_004924
The Genetic Marker MK011729 2_1777166 is located in Gene DCAR_004924
The Genetic Marker MK009428 2_1777220 is located in Gene DCAR_004924
The Genetic Marker MK008036 2_1779166 is located in Gene DCAR_004924

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False