DCAR_004480 | CarrotOmics Tripal4

Cds

>DCAR_004480cds ATGGAGGAAAATGAGCCACTTTTAGAGAGCAACAAGCAAAAGAGCTATGG TGGCTTCAGGACCCTGGCATGCATCATTGCAAATGAGTCATTGGAAAAGG CAGCAGCTTTTGGGCTGAGTGCTAACTTGATACTGTACCTGGAGAATGAG TATCACATGGGTTTAGTTACTGGGACAAATATTATCAATTTATGGGGAGC TGCTGGCAATTTCTTGCCTGTTCCTGGAGCTTTTCTTGCTGATTCTGGTG TTGGTCGCTACCCTATGATCGCGGTTGGATCTGTATTTGGCCTCCTGGGG ATGATTCTAGTATGGCTAACAACCGTGATTCCAGAAGCAAGGCCACCAAT TTGCGACATACTTACTGCAGAATGCAGCTCCTCCACAGCTCCACAAGTGA TTTTCTTATGTTTCTCTCTCGGGCTCACAGCAATTGGTGCAGGGGGTATC CGCTCAGCTTCCATGGCCTTTGGTGCAGATCAATTTGTCAAGAGATACAA CCAGGAAGAGAGTTTGGCTGCCCTGGAAAGTTATTTTGGCTGGTATTATG TTGCTTCTGCAGTTGCAGTTATCATTTCCTTAACTTTTGTTGCCTATATT CAAGAACACTCGGGTTGGCAAGTTGGTCTTGGAGTTCCTGCAGTGTTGAT GCTGTTGGGAGTGTTGTTATTCTTTTCGGCTTCTTCTTTCTACATCAGGT CACAGGATAAATCAAGCTTGTTCACTAGCTTCTCCCAAGTCATTGTAGCT TCCTACAAAAAAAGGCGTTTCACAATAACCCCGGATATAAATAATGTCTA CTATCATAAGAAGGAATCAGCACTTGTTGTCCCAAGTGATAAACTGAGGT TCCTCAACAAGGCCTGTATCGTCGAAGAGCCTGAAAGGCACTTGACAGCG GATGGAGACATTCAGGACCCGTGGAGCCTCTGTACAGTTGATCAAGTGGA GGAGTTAAAAGCCATTCTGAAGGTGATCCCAATGTGGTCTACAGGAGTTA TCTTGTCTGTAACCTTAAGTCAGGGTAGTTTACAGCTAGTCCAAGCCCTG TCCATGGATCGACACATCACTCCAGGTTTTGAGATCCCAGCAGCATCTTT AGGCGTCTTCACTTTCATTTCTGCCATATCATCCGTCGTTCTTTATGACC GTGTAATTGTTCCTCTGGCATCCAGAATCATGGAAAAGCCTTTTCATCTC ACCTCCAAAACAAAAATGGGAACTGGAATATTTTTATCCATCTTAAGCAT GCTCGTCTTAGCTTACATAGAGTACGTCAGAAGAGGCCTCGCAACTCAAC AAGGCCTGTCAGAACCCGTAGTAAACATGTCAGTATTCTGGCTCATATTA CCAAACTGTTTGATTGGCATTGCAGAGGCTATCAACGCAGTAGGCCAATG TGAGTTCTTTTACTCCGAGTTCCCCAAAAGCATGTCCAGCATTGGCTCAA CTCTACGCGGACTAACATTCACTGTCGGAGGCCTGGTGGCAACTGCAATG CTGAACATTGTGGATCAGGTTACAAGAAGAGGAGGGAAAGCAAGTTGGAT ATCAAGCAACATAAACCAAGGTCATTATGATTACTATTTTCTGATGATTG CTGGAATGTGTGTTGTCAACATGTTATATTATCTTGTTTGTAGCTGGGCC TATGGTCCTTGTGAACTGGTTGCAGTGAAGGATTCACAGAAAGAAAGGTG A

Locus_tag

DCAR_004480

Name

DCAR_004480

Organism

Daucus carota subsp. sativus

Pep

>DCAR_004480pep MEENEPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENE YHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLG MILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGI RSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYI QEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVA SYKKRRFTITPDINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTA DGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQAL SMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHL TSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGLSEPVVNMSVFWLIL PNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAM LNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWA YGPCELVAVKDSQKER*

Sequence Coordinates

DCARv2_Chr1:48415230..48417557+

Type

gene

Unique Name

DCAR_004480.gene

Sequence Residues

ATGGAGGAAAATGAGCCACTTTTAGAGAGCAACAAGCAAAAGAGCTATGG
TGGCTTCAGGACCCTGGCATGCATCATTGGTAAAAAAGTTTACTTTTATT
CTTTTGGTGTTGATTTTTACCTGTTGAGTTTCATTTCACTTTTGCTTTTG
CAAATGCAGCAAATGAGTCATTGGAAAAGGCAGCAGCTTTTGGGCTGAGT
GCTAACTTGATACTGTACCTGGAGAATGAGTATCACATGGGTTTAGTTAC
TGGGACAAATATTATCAATTTATGGGGAGCTGCTGGCAATTTCTTGCCTG
TTCCTGGAGCTTTTCTTGCTGATTCTGGTGTTGGTCGCTACCCTATGATC
GCGGTTGGATCTGTATTTGGCCTCCTGGTATTGATTCCCTGTTTTGCTGA
GCTCTTTCTTCGTCCTGACATTGTAGTCTAGTTAGGGGCGGATTTAGTAA
GACGTGTCCCTCCTACAAAAAATTTGACACTTTTTCATCATTCTAAAATT
TACAAAATAATAATAGTGTTCCTAGAAAATTTGAAAATATATAGATTTTA
TCTGAAAATTTGCTTGATGCCACCTGCTAAATCCCATAGTAGATCCGCCC
CTAAGTCTAGTAGATACCTAGCATTTGTCTTAGCGGAAACAAATGTGTGC
AGTACTAAATATATAATAATAAGAGTCGTTTAGTTTAAAACTATGTCTTG
TCAGATAGAACAACTGAAAGATTTCTAAATGTATTAGAAACTTGATTGTT
ATATATATGTGTGTGTGTTTTACTGATTAATATTGTTATATATTTGACGA
AAATAAGTGCATGACTGAGTTTAAATTTTAGGGGATGATTCTAGTATGGC
TAACAACCGTGATTCCAGAAGCAAGGCCACCAATTTGCGACATACTTACT
GCAGAATGCAGCTCCTCCACAGCTCCACAAGTGATTTTCTTATGTTTCTC
TCTCGGGCTCACAGCAATTGGTGCAGGGGGTATCCGCTCAGCTTCCATGG
CCTTTGGTGCAGATCAATTTGTCAAGAGATACAACCAGGAAGAGAGTTTG
GCTGCCCTGGAAAGTTATTTTGGCTGGTATTATGTTGCTTCTGCAGTTGC
AGTTATCATTTCCTTAACTTTTGTTGCCTATATTCAAGAACACTCGGGTT
GGCAAGTTGGTCTTGGAGTTCCTGCAGTGTTGATGCTGTTGGGAGTGTTG
TTATTCTTTTCGGCTTCTTCTTTCTACATCAGGTCACAGGATAAATCAAG
CTTGTTCACTAGCTTCTCCCAAGTCATTGTAGCTTCCTACAAAAAAAGGC
GTTTCACAATAACCCCGGATATAAATAATGTCTACTATCATAAGAAGGAA
TCAGCACTTGTTGTCCCAAGTGATAAACTGAGGTAATTCACGCCATGATT
TCTATTGCACACCCTATAATTAAATAGCTCTTGCAGATATTAATTCCTAT
TTGTCGATTTTATGTCTTCATTAGGTTCCTCAACAAGGCCTGTATCGTCG
AAGAGCCTGAAAGGCACTTGACAGCGGATGGAGACATTCAGGACCCGTGG
AGCCTCTGTACAGTTGATCAAGTGGAGGAGTTAAAAGCCATTCTGAAGGT
GATCCCAATGTGGTCTACAGGAGTTATCTTGTCTGTAACCTTAAGTCAGG
GTAGTTTACAGCTAGTCCAAGCCCTGTCCATGGATCGACACATCACTCCA
GGTTTTGAGATCCCAGCAGCATCTTTAGGCGTCTTCACTTTCATTTCTGC
CATATCATCCGTCGTTCTTTATGACCGTGTAATTGTTCCTCTGGCATCCA
GAATCATGGAAAAGCCTTTTCATCTCACCTCCAAAACAAAAATGGGAACT
GGAATATTTTTATCCATCTTAAGCATGCTCGTCTTAGCTTACATAGAGTA
CGTCAGAAGAGGCCTCGCAACTCAACAAGGCCTGTCAGAACCCGTAGTAA
ACATGTCAGTATTCTGGCTCATATTACCAAACTGTTTGATTGGCATTGCA
GAGGCTATCAACGCAGTAGGCCAATGTGAGTTCTTTTACTCCGAGTTCCC
CAAAAGCATGTCCAGCATTGGCTCAACTCTACGCGGACTAACATTCACTG
TCGGAGGCCTGGTGGCAACTGCAATGCTGAACATTGTGGATCAGGTTACA
AGAAGAGGAGGGAAAGCAAGTTGGATATCAAGCAACATAAACCAAGGTCA
TTATGATTACTATTTTCTGATGATTGCTGGAATGTGTGTTGTCAACATGT
TATATTATCTTGTTTGTAGCTGGGCCTATGGTCCTTGTGAACTGGTTGCA
GTGAAGGATTCACAGAAAGAAAGGTGA

Sequence Length

2327

Sequence MD5 Checksum

b4a18e1a150cdee8ea3bae7b1f4f585f

Relationship

The mRNA DCAR_004480 is a part of Gene DCAR_004480
The Genetic Marker MK006227 K3671 is located in Gene DCAR_004480

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False