DCAR_003879 | CarrotOmics Tripal4

Cds

>DCAR_003879cds ATGAACATATGTCACCACAACTTTCCGCTTAGCAACGACTACCAAACTGC AAATCGCGGCCCGAGGTCGAGGGTTCGAGCCTTTCAAGAAGCTACACAAG AGGCTCAAAAACCTTCAAAAATGACCACCCGTTTAGCAGAATCAGTCTCC CACATGTTGCATCTTCATATTGAGAAACCAAAGCCAAAGAGCTTAAGGAC AATGATTAATTCACATGATAAGCCAATTTTGTCACCTAAGGAAGATATTT CGGACAAATGGCGCCAAATTCAGGGCTCTTCTGGCTGGGGAGATCTTCTT GATCCTCTGCACCCCTGTCTTAGACGTGAGATTCTTAAGTACGGGGAGTT CGCGCAAGCTACTTATGATGCTTTCGACTTCGATTCCTTCTCGGAGTATT GTGGGAGTTGTAGGTTCAGTCGAAACAATTTGTTAAATAAACTAGGACTT CATTACCATAACTACAATGTTTCTAAGTACATTTACGCCATGTCACACGT TGACGTTCCTCAATGGCTAAAGAAATCCCACGTCATGGACTCGTGGAGCC GGGACTCGAATTGGATGGGGTATGTTGCGGTGAGTGATGACAAGGAGTCT AGGAGAATTGGGAGAAGAGATATAGTTGTGGCGTGGCGAGGCACTGTGGC GCCAACAGAGTGGTACGAGGATTTACAGAGGAAATTAGAGCCTATTGGAG CAGGGGAAGCGAAAGTAGAACATGGATTCCTAAGCATTTACAAGGCGAAA AACGAGTACACTAGGTATAACAAGTCGAGTGCCTCGGAACAAGTTATAAC AGAACTGAAAAGGCTGGTGAAATTGTACAAAGAAAGAGGTGAGGAGGTGA GCATTACAGTGACTGGCCACAGTCTTGGTGGCGCATTGGCAGTGCTCAAC GCGTATGAGACCGCGACTCTTGTTCCTAATGTGCCCATCACGGTGGTTTC ATTTGGGGCGCCTAGAGTTGGGAATATAGCATTTAGAGACGAGTTGCATC AGAAAGGGGTCAAGACATTGCGGATTGTTGTGAAGCAGGATTTTGTGCCT CGGATGCCTGGGATTGTGCTTAATGAAAGCCTGCAGAAATTTGATGACAT AACTGGGACACTAGAGTGGGTTTATGCACATGTTGGAGCTGAACTGAAGC TTGATGTTCGCGCTTCACCTTACCTTAAACGAGGATTCAACGTACTAGGG TACCATAGCCTGGAAACATACCTTCATCTGGTGGATGGATTTGTGAGCAC AGAGTCATCGTTCCGGACAGAAGCTAGAAGGGATGTTGCACTGGTAAACA AGGCATGCGATATGCTAGTGGAAGAATTAAGAATTCCACATTTTTGGTAT CAAATGGCTAACAAGGGGTTAGTATGTAATGATCATGGAAGGTGGGTAAA ACCCGAAAGGGACCCTGAAGATGTGCCTTCACCTACTAGTGAAGGACAGT ATAATGTATTTCATCACTTAGAATCTAATTATCAAGGAGCTTGA

Locus_tag

DCAR_003879

Name

DCAR_003879

Organism

Daucus carota subsp. sativus

Pep

>DCAR_003879pep MNICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMTTRLAESVS HMLHLHIEKPKPKSLRTMINSHDKPILSPKEDISDKWRQIQGSSGWGDLL DPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGL HYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKES RRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAK NEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLN AYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVP RMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLG YHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWY QMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVFHHLESNYQGA*

Sequence Coordinates

DCARv2_Chr1:42799769..42801263+

Type

gene

Unique Name

DCAR_003879.gene

Sequence Residues

ATGAACATATGTCACCACAACTTTCCGCTTAGCAACGACTACCAAACTGC
AAATCGCGGCCCGAGGTCGAGGGTTCGAGCCTTTCAAGAAGCTACACAAG
AGGCTCAAAAACCTTCAAAAATGACCACCCGTTTAGCAGAATCAGTCTCC
CACATGTTGCATCTTCATATTGAGAAACCAAAGCCAAAGAGCTTAAGGAC
AATGATTAATTCACATGATAAGCCAATTTTGTCACCTAAGGAAGATATTT
CGGACAAATGGCGCCAAATTCAGGGCTCTTCTGGCTGGGGAGATCTTCTT
GATCCTCTGCACCCCTGTCTTAGACGTGAGATTCTTAAGTACGGGGAGTT
CGCGCAAGCTACTTATGATGCTTTCGACTTCGATTCCTTCTCGGAGTATT
GTGGGAGTTGTAGGTTCAGTCGAAACAATTTGTTAAATAAACTAGGACTT
CATTACCATAACTACAATGTTTCTAAGTACATTTACGCCATGTCACACGT
TGACGTTCCTCAATGGCTAAAGAAATCCCACGTCATGGACTCGTGGAGCC
GGGACTCGAATTGGATGGGGTATGTTGCGGTGAGTGATGACAAGGAGTCT
AGGAGAATTGGGAGAAGAGATATAGTTGTGGCGTGGCGAGGCACTGTGGC
GCCAACAGAGTGGTACGAGGATTTACAGAGGAAATTAGAGCCTATTGGAG
CAGGGGAAGCGAAAGTAGAACATGGATTCCTAAGCATTTACAAGGCGAAA
AACGAGTACACTAGGTATAACAAGTCGAGTGCCTCGGAACAAGTTATAAC
AGAACTGAAAAGGCTGGTGAAATTGTACAAAGAAAGAGGTGAGGAGGTGA
GCATTACAGTGACTGGCCACAGTCTTGGTGGCGCATTGGCAGTGCTCAAC
GCGTATGAGACCGCGACTCTTGTTCCTAATGTGCCCATCACGGTGGTTTC
ATTTGGGGCGCCTAGAGTTGGGAATATAGCATTTAGAGACGAGTTGCATC
AGAAAGGGGTCAAGACATTGCGGATTGTTGTGAAGCAGGATTTTGTGCCT
CGGATGCCTGGGATTGTGCTTAATGAAAGCCTGCAGAAATTTGATGACAT
AACTGGGACACTAGAGTGGGTTTATGCACATGTTGGAGCTGAACTGAAGC
TTGATGTTCGCGCTTCACCTTACCTTAAACGAGGATTCAACGTACTAGGG
TACCATAGCCTGGAAACATACCTTCATCTGGTGGATGGATTTGTGAGCAC
AGAGTCATCGTTCCGGACAGAAGCTAGAAGGGATGTTGCACTGGTAAACA
AGGCATGCGATATGCTAGTGGAAGAATTAAGAATTCCACATTTTTGGTAT
CAAATGGCTAACAAGGGGTTAGTATGTAATGATCATGGAAGGTGGGTAAA
ACCCGAAAGGGACCCTGAAGATGTGCCTTCACCTACTAGTGAAGGACAGT
ATAATGTATTTCATCACTTAGAATCTAATTATCAAGGAGCTTGA

Sequence Length

1494

Sequence MD5 Checksum

e16d602cfe93bad237dab128e3c44440

Relationship

The mRNA DCAR_003879 is a part of Gene DCAR_003879
The Genetic Marker MK003443 K0887 is located in Gene DCAR_003879

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False