NCBI Assembly GCA_947179155.2; drHedHeli1.2; Chromosome level assembly

Alt_loci_count_all
0
Chromosome_count_all
  • 24
  • 0
Contig_count_all
  • 377
  • 5798
Contig_l50_all
  • 31
  • 303
Contig_n50_all
  • 13335294
  • 966416
Full_ncbi_xml
  • 38458538 GCA_947179155.2 GCA_947179155.2 947179155 drHedHeli1.2 4052 Hedera helix (English ivy) 4052 Hedera helix haploid (principal pseudohaplotype of diploid) Chromosome 3 CAMXCC02 PRJEB56940 893974 SAMEA7522625 16696085 29 false 38458518 Major Major 2022/12/15 00:00 1/01/01 00:00 2022/12/06 00:00 2022/12/15 00:00 2022/12/06 00:00 2022/12/15 00:00 WELLCOME SANGER INSTITUTE representative genome full-genome-representation has-chloroplast has-chromosome has-mitochondrion has_linked_assembly latest latest_genbank representative wgs GCA_947179155.2 13335294 50454882 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/155/GCA_947179155.2_drHedHeli1.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/155/GCA_947179155.2_drHedHeli1.2/GCA_947179155.2_drHedHeli1.2_assembly_report.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/155/GCA_947179155.2_drHedHeli1.2/GCA_947179155.2_drHedHeli1.2_assembly_stats.txt 0 2C3X9E939866647059471791559700 0 24 377 31 13335294 2 26 55 26 6 23 11 50454882 1199358263 1199281935 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/155/GCA_947179155.2_drHedHeli1.2/GCA_947179155.2_drHedHeli1.2_assembly_report.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/155/GCA_947179155.2_drHedHeli1.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/155/GCA_947179155.2_drHedHeli1.2/GCA_947179155.2_drHedHeli1.2_assembly_stats.txt 3 Chromosome representative genome WELLCOME SANGER INSTITUTE ]]>
  • 38306438 GCA_947179205.2 GCA_947179205.2 947179205 drHedHeli1.2 alternate haplotype 4052 Hedera helix (English ivy) 4052 Hedera helix alternate-pseudohaplotype (alternate pseudohaplotype of diploid) Scaffold 5 CAMXCB02 PRJEB56939 893973 SAMEA7522625 16696085 29 false 38306428 Major Major 2022/12/12 00:00 1/01/01 00:00 2022/12/02 00:00 2022/12/12 00:00 2022/12/02 00:00 2022/12/12 00:00 WELLCOME SANGER INSTITUTE na full-genome-representation has_linked_assembly latest latest_genbank wgs GCA_947179205.2 966416 974908 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/205/GCA_947179205.2_drHedHeli1.2_alternate_haplotype ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/205/GCA_947179205.2_drHedHeli1.2_alternate_haplotype/GCA_947179205.2_drHedHeli1.2_alternate_haplotype_assembly_report.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/205/GCA_947179205.2_drHedHeli1.2_alternate_haplotype/GCA_947179205.2_drHedHeli1.2_alternate_haplotype_assembly_stats.txt 0 5C5X9E939990335839471792059700 0 0 5798 303 966416 0 0 5777 0 0 5777 297 974908 1083235880 1083234874 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/205/GCA_947179205.2_drHedHeli1.2_alternate_haplotype/GCA_947179205.2_drHedHeli1.2_alternate_haplotype_assembly_report.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/205/GCA_947179205.2_drHedHeli1.2_alternate_haplotype ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/179/205/GCA_947179205.2_drHedHeli1.2_alternate_haplotype/GCA_947179205.2_drHedHeli1.2_alternate_haplotype_assembly_stats.txt 8 Scaffold na WELLCOME SANGER INSTITUTE ]]>
Name
NCBI Assembly GCA_947179155.2; drHedHeli1.2; Chromosome level assembly
NCBI Data Download FTP Link
Non_chromosome_replicon_count_all
  • 2
  • 0
Replicon_count_all
  • 26
  • 0
Scaffold_count_all
  • 55
  • 5777
Scaffold_count_placed
  • 26
  • 0
Scaffold_count_unlocalized
  • 6
  • 0
Scaffold_count_unplaced
  • 23
  • 5777
Scaffold_l50_all
  • 11
  • 297
Scaffold_n50_all
  • 50454882
  • 974908
Total_length_all
  • 1199358263
  • 1083235880
Type
Sequence assembly (genome assembly)
Ungapped_length_all
  • 1199281935
  • 1083234874
Program, Pipeline, Workflow or Method Name
various
Program Version
GCA_947179155.2
Data Source Name
SAMEA7522625
Relationship
The Genome Assembly NCBI Assembly GCA_947179205.2; drHedHeli1.2 alternate haplotype; Chromosome level assembly is a part of Genome Assembly NCBI Assembly GCA_947179155.2; drHedHeli1.2; Chromosome level assembly
Database Reference Annotations
Project
drHedHeli1: Hedera helix genome assembly, drHedHeli1
Biological Sample
SAMEA7522625
Organism
Hedera helix
Date and Time Executed
2022-12-06 00:00:00