DCAR_002922 | CarrotOmics Tripal4

Cds

>DCAR_002922cds ATGGCATCTATGCGCTTAACACTGCTGCTTTTATTCTTCACACTCAATTT TGTGATGTTTCACAGCCAAGCTAGATATCATTATCATAAAAAGCGCAAGC ATTCGCCTCCAACGTCGCAAATTTCTCAGCCTCCGTCTGGTGCACCAGCA GCGGGAGCACCAGGACCATCTAATCAGCCTCCGAAGGCTGATCCTAATGT AAATCCTGGTGTTTTTGACGTCAGAAATTTTGGTGCTGTCGGAGATGGCA TGACTGATGACACAGAGGCATTCAAGGCAGCTTGGGACGCCGCGTGCCAA TTTGAATCCGGAGTTCTTCTTGTTCCTAAGAGTTACTCTTTTATGATTCA GTCCACAATTTTCACTGGCCCTTGTAAAGGTGGTCTTGTTTTCAAGGTTG ATGGCACAGTAATGCCACCAGATGGACCTGAATTATGGCCATCAAAGAAT AGCAAACATCAGTGGCTGGTCTTTTACAGACTCGACGAGATGTCGTTGCA AGGCGGTGGTGAGATTAATGGAAGAGGCGAAAAATGGTGGAACCTCCCCT GCAAGCCTCATAGGGGACCTAACGGAAGCACATTGCCAGGACCATGTGAC AGCCCAGTTGCTATCAGGTTCTTCATGAGCAACAATTTGACAGTGCAAGG ACTTAAAATCATCGACAGCCCTCAGTTCAACTTCAGATTTGATAAATGCA CCAATGTCCATGTCGAATCAATTCACATTACAGCTCCAGCTCTGAGTCCA AACACTGATGGGATTCATATAGAAAACGCCAACAATGTCCGGATATATGA TTCCACAATATCTAATGGGGACGACTGTGTATCAATTGGATCGGGATGTT ATGATGTAGACATAAGAAACATTACATGTGGACCTGGCCACGGAATTAGC ATTGGGAGTTTAGGCAACCACAATTCGCGAGCCTGTGTTTCAAACATCAC GGTCAGGGACTCGGTGATAAAGAACACAGACAACGGAGTTAGGATCAAGA CATGGCAAGGAGGTTCTGGCGCAGTATCTGGAATCACATTCGACAACCTT CACATGGAAAATGTTAGAAATCCAATTATGATTGACCAATTCTATTGCCT CACCAAAGACTGTAAAAACGGAAGCTCAGCTGTCCTCGTGTCCGACATTC AGTACTCGGGTATCAAAGGAACCTATGATATCAGAAGCCCTCCTATGCAT TTTGCCTGCAGTGATTCAGTTCCATGCACAAATATAACACTTTCTGATGT GGAACTCCTTCCTGCAAAAGGAGAGATGGTTCTTGATCCGTTTTGTTGGA ATGCTTATGGAGATTTCGAAGCACTAACCATACCACCAGTGTCCTGTTTG TTGGCGGGAAATCCTCGTTCAATCTTGGAAAATTCATTAGGCCTTTGCTA A

Locus_tag

DCAR_002922

Name

DCAR_002922

Organism

Daucus carota subsp. sativus

Pep

>DCAR_002922pep MASMRLTLLLLFFTLNFVMFHSQARYHYHKKRKHSPPTSQISQPPSGAPA AGAPGPSNQPPKADPNVNPGVFDVRNFGAVGDGMTDDTEAFKAAWDAACQ FESGVLLVPKSYSFMIQSTIFTGPCKGGLVFKVDGTVMPPDGPELWPSKN SKHQWLVFYRLDEMSLQGGGEINGRGEKWWNLPCKPHRGPNGSTLPGPCD SPVAIRFFMSNNLTVQGLKIIDSPQFNFRFDKCTNVHVESIHITAPALSP NTDGIHIENANNVRIYDSTISNGDDCVSIGSGCYDVDIRNITCGPGHGIS IGSLGNHNSRACVSNITVRDSVIKNTDNGVRIKTWQGGSGAVSGITFDNL HMENVRNPIMIDQFYCLTKDCKNGSSAVLVSDIQYSGIKGTYDIRSPPMH FACSDSVPCTNITLSDVELLPAKGEMVLDPFCWNAYGDFEALTIPPVSCL LAGNPRSILENSLGLC*

Sequence Coordinates

DCARv2_Chr1:34020394..34022705-

Type

gene

Unique Name

DCAR_002922.gene

Sequence Residues

TGCAAATTTATCGAAAAGAAGAGAGACCAAGGTTCTATCTTCTGCTCTCA
CTTGCTTGGCTCTTCTTTCACCTCTATTTTTTTTTCTCGAAATATATCAT
CCTATCCAAGCTAATCAAACAGCATATAATATTCTCTAAGGTACAAGTTC
ACTTTGTTAGCCCAAGGCGTGACCACAATCGAAATACACACTATTATTGT
ATGGTGCACATAATATTGGAATAGACTTCAACCACCACATCTTACTATAT
ATACATGACTTCACCAGCTGAGATATTGCATGCAATTGCAAGTACCTCTG
CAAACTAAACTTAAGTTACTTAACCAATTAAGTTGACCTTTTGCAACTTC
CCTTGCCCTCAGGACTCATAAAGCCTTATAGCATCTAAAAAATCCACATT
TCATTTTCTCTGATCACTGTCAAAAACTTCAGCTTCTTGTCTATTCAAAT
TATGGCATCTATGCGCTTAACACTGCTGCTTTTATTCTTCACACTCAATT
TTGTGATGTTTCACAGCCAAGCTAGATATCATTATCATAAAAAGCGCAAG
CATTCGCCTCCAACGTCGCAAATTTCTCAGCCTCCGTCTGGTGCACCAGC
AGCGGGAGCACCAGGACCATCTAATCAGCCTCCGAAGGCTGATCCTAATG
TAAATCCTGGTGTTTTTGACGTCAGAAATTTTGGTGCTGTCGGAGATGGC
ATGACTGATGACACAGAGGCATTCAAGGCAGCTTGGGACGCCGCGTGCCA
ATTTGAATCCGGAGTTCTTCTTGTTCCTAAGAGTTACTCTTTTATGATTC
AGTCCACAATTTTCACTGGCCCTTGTAAAGGTGGTCTTGTTTTCAAGGTA
GACATTGTTTGTATTATTGATTAATTAATTGTCCTGTTTGTAACAGCTTT
GCCACTTCTGCACAGAAAGTTAATAATTTTTTTAACTTAATTGAAAGGTT
GATGGCACAGTAATGCCACCAGATGGACCTGAATTATGGCCATCAAAGAA
TAGCAAACATCAGTGGCTGGTCTTTTACAGACTCGACGAGATGTCGTTGC
AAGGCGGTGGTGAGATTAATGGAAGAGGCGAAAAATGGTGGAACCTCCCC
TGCAAGCCTCATAGGGTGTGTATCTCTTTTGATTCATCAAACTGCAAATT
TGGAAGATAAAATTGTCGTAATAACAATATAAACCTTATCTGCAGGGACC
TAACGGAAGCACATTGCCAGGACCATGTGACAGCCCAGTTGTAAGTAAAA
AGTTCACCTCACAATATCTACATATTTCATATAGAATTTGGCTTATGGAA
TTTCTTATCTTATAGGCTATCAGGTTCTTCATGAGCAACAATTTGACAGT
GCAAGGACTTAAAATCATCGACAGCCCTCAGTTCAACTTCAGATTTGATA
AATGCACCAATGTCCATGTCGAATCAATTCACATTACAGCTCCAGCTCTG
AGTCCAAACACTGATGGGATTCATATAGAAAACGCCAACAATGTCCGGAT
ATATGATTCCACAATATCTAATGGTAGCTCAAGTACTTTCTACGTCATTT
ACCAATCATTATTTTGGCTAATAATATTCTTCTTTTTACAAATTTATACT
AATAGTTTGATGATTGATTCTTTTGCAGGGGACGACTGTGTATCAATTGG
ATCGGGATGTTATGATGTAGACATAAGAAACATTACATGTGGACCTGGCC
ACGGAATTAGGTACATTTAAAACTACTTGCTACAAAGTTTCTTGATGTTT
GTGGACTCAAAATTTATAGAATTATCTTTTGTTTAATGTAGCATTGGGAG
TTTAGGCAACCACAATTCGCGAGCCTGTGTTTCAAACATCACGGTCAGGG
ACTCGGTGATAAAGAACACAGACAACGGAGTTAGGATCAAGACATGGCAA
GGAGGTTCTGGCGCAGTATCTGGAATCACATTCGACAACCTTCACATGGA
AAATGTTAGAAATCCAATTATGATTGACCAATTCTATTGCCTCACCAAAG
ACTGTAAAAACGGAAGCTCAGCTGTCCTCGTGTCCGACATTCAGTACTCG
GGTATCAAAGGAACCTATGATATCAGAAGCCCTCCTATGCATTTTGCCTG
CAGTGATTCAGTTCCATGCACAAATATAACACTTTCTGATGTGGAACTCC
TTCCTGCAAAAGGAGAGATGGTTCTTGATCCGTTTTGTTGGAATGCTTAT
GGAGATTTCGAAGCACTAACCATACCACCAGTGTCCTGTTTGTTGGCGGG
AAATCCTCGTTCAATCTTGGAAAATTCATTAGGCCTTTGCTAATTAACTA
CCTATATATTG

Sequence Length

2311

Sequence MD5 Checksum

c020381ec53eae8314d7268953e645d4

Relationship

The mRNA DCAR_002922 is a part of Gene DCAR_002922
The Genetic Marker MK004576 K2020 is located in Gene DCAR_002922

Database Reference Annotations

GFF_source:.

Publication

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Analysis

Is Analysis

False

Is Obsolete

False